Table 2.

Non synonymous single nucleotide polymorphisms of particular interest present in isolates within the series.

Gene	Description	V130-18	V130-54	V157-39	V157-40	V157-47	V157-48	V157-59	V157-60	V157-62	V157-61	V157-80
AFUA_1G09270	Transmembrane glycoprotein						S772N	S772N	S772N	S772N	S772N	S772N
AFUA_1G12540	TMEM1 family protein							F879C	F879C	F879C	F879C
AFUA_2G01700	Carbon catabolite Derepressing protein kinase Snf1							R188Q	R188Q	R188Q	R188Q
AFUA_2G02320	Hsp70 chaperone (BiP)								490*		490*
AFUA_2G08040	C6 finger domain protein			D347Y			D347Y	D347Y	D347Y	D347Y	D347Y	D347Y
AFUA_3G07940	Phosphoinositide phospholipase C							KSS213KS	KSS213KS	KSS213KS	KSS213KS
AFUA_3G08990	Cell surface protein	F141S	F141S
AFUA_3G10250	Cell division control protein (Cdc15)			D220G	D220G		D220G	D220G	D220G	D220G	D220G	D220G
AFUA_3G11940	Chromatin modification-related protein			154X				292*	292*	292*	292*	154X
AFUA_4G06890	Cyp51A			G54R	G54V	P216L	P216L	M220R	M220R	M220R	M220R	P216L
AFUA_4G08100	Uncharacterised protein			V204A			V204A	V204A	V204A	V204A	V204A	V204A
AFUA_4G13800	Exo-alpha-sialidase							T214K	T214K	T214K	T214K
AFUA_4G14310	Uncharacterised protein				A207I V209I				A207I V209I	A207I V209I	A207I V209I	A207I V209I
AFUA_5G03760	Endochitinase A1	S438P	S438P V436I
AFUA_5G04050	Scramblase family protein			128*				128*	128*	128*	128*	128*
AFUA_6G00530	Uncharacterised protein						Y380H	Y380H	Y380H	Y380H	Y380H	Y380H
AFUA_6G10050	Small oligopeptide transporter, OPT family			G428S	G428S		G428S	G428S	G428S	G428S	G428S	G428S
AFUA_6G10620	Nuclear pore complex subunit			D43N	D43N		D43N	D43N	D43N	D43N	D43N	D43N
AFUA_6G14720	Telomere-associated RecQ helicase	I1077V	I1077V P1152L R984C	G1119R	R984C A994V S996N			D123N			T969A

Isolates V130-15 and V130-14 have been excluded from this table as they were defined as references, and therefore did not contain any substitutions.