Table 2. Analysis of HOTAIR co-expression with HOXA9 in glioma datasets and in other cancer types (lung, leukemia, colorectal, and breast cancer datasets from TCGA) available at Oncomine(1).
Datasets | Correlation HOTAIR/HOXA9 | p-value |
---|---|---|
Glioma, NOS | ||
Portuguese dataset | 0.642 | <0.0001 |
French dataset | 0.516 | <0.001 |
TCGA, microarray data | 0.545 | <0.0001 |
TCGA, RNA-seq data | 0.675 | <0.0001 |
Oncomine: | ||
Freije et al. (Freije, et al. 2004) | 0.372 | <0.001 |
Murat (Murat, et al. 2008) | 0.293 | 0.008 |
Sun (Sun, et al. 2006) | 0.487 | <0.0001 |
Phillips (Phillips, et al. 2006) | 0.309 | 0.001 |
Other cancers from Oncomine: | ||
TCGA Lung | 0.046 | 0.555 |
TCGA Leukemia | –0.019 | 0.791 |
TCGA Colorectal | 0.012 | 0.854 |
TCGA Breast | –0.051 | 0.215 |
(1)Microarray data from Oncomine dataset, microarray or RNA-seq data from TCGA dataset, quantitative PCR data from the Portuguese dataset (relative gene expression normalized to hGUS or TBP levels), and microfluidic-based qPCR analysis (Fluidigm) data from the French dataset were used to evaluate the Pearson’s correlation.
NOS – not otherwise specified.