Table 1. Data collection and refinement statistics.
Apo | Sisomicin | CoA | Ternary | Acetyl-CoA | Acetylated sisomicin | |
Resolution range | 50.0 to 2.2 (2.27 to 2.20) |
50.0 to 1.8 (1.86 to 1.80) |
50.0 to 2.2 (2.28 to 2.20) |
50.0 to 2.05 (2.12 to 2.05) |
50.0 to 2.05 (2.12 to 2.05) |
50.0 to 2.2 (2.27 to 2.20) |
Space group | C 2 | P 61 | P 61 | P 61 | P 61 | C 2 |
Unit cell | ||||||
a, b, and c (Å) | 89.0, 86.0, and 51.1 | 78.6, 78.6, and 83.6 | 78.1, 78.1 and 83.3 | 77.5, 77.5, and 83.9 | 78.5, 78.5, and 83.9 | 84.4, 86.9, and 50.3 |
α, β, and γ (°) | 90, 120.0, and 90 | 90, 90, and 120 | 90, 90, and 120 | 90, 90, and 120 | 90, 90, and 120 | 90, 119.8, and 90 |
Unique reflections | 15,393 | 26,880 | 14,077 | 18,004 | 18,240 | 14,753 |
Multiplicity* | 2.4 (2.2) | 2.9 (2.8) | 5.6 (4.9) | 2.9 (2.7) | 2.6 (2.1) | 3.0 (2.6) |
Completeness (%) | 90.5 (94.7) | 98.7 (96.3) | 95.1 (72.2) | 99.3 (98.2) | 98.6 (97.0) | 91.8 (97.3) |
Mean I/σ(I) | 8.8 (2.4) | 12.0 (2.4) | 23.0 (3.8) | 11.0 (2.0) | 11.6 (2.3) | 10.4 (3.2) |
Wilson B-factor | 37.4 | 16.54 | 32.7 | 31.58 | 23.02 | 39.2 |
R-merge | 0.084 (0.504) | 0.089 (0.532) | 0.091 (0.484) | 0.10 (0.602) | 0.101 (0.526) | 0.094 (0.554) |
Reflections used in refinement |
15,388 | 26,851 | 14,073 | 17,984 | 18,233 | 14,750 |
Reflections used for R-free | 771 | 1302 | 688 | 899 | 905 | 737 |
R-work | 0.236 (0.314) | 0.149 (0.227) | 0.176 (0.208) | 0.189 (0.289) | 0.179 (0.275) | 0.282 (0.450) |
R-free | 0.267 (0.333) | 0.186 (0.286) | 0.212 (0.289) | 0.207 (0.278) | 0.205 (0.288) | 0.308 (0.496) |
Number of nonhydrogen atoms |
||||||
Macromolecules | 2028 | 2089 | 2042 | 2048 | 2043 | 2028 |
Ligands | 1 | 35 | 48 | 79 | 51 | 35 |
Solvent | 51 | 398 | 129 | 185 | 274 | 57 |
RMS (bonds) | 0.002 | 0.009 | 0.002 | 0.002 | 0.002 | 0.004 |
RMS (angles) | 0.5 | 0.9 | 0.6 | 0.5 | 0.5 | 0.9 |
Ramachandran favored (%) | 95.1 | 97.0 | 96.0 | 96.2 | 97.0 | 96.6 |
Ramachandran allowed (%) | 4.1 | 3.0 | 3.6 | 3.4 | 2.6 | 3.4 |
Ramachandran outliers (%) | 0.8 | 0.0 | 0.4 | 0.4 | 0.4 | 0.0 |
Clashscore | 7 | 5 | 3 | 2 | 2 | 6 |
Average B-factor | 44 | 19 | 33 | 31 | 23 | 51 |
Macromolecules | 44 | 17 | 33 | 31 | 22 | 51 |
Ligands | 43 | 20 | 60 | 32 | 32 | 53 |
Solvent | 42 | 30 | 36 | 34 | 29 | 49 |
PDB code | 6BC6 | 6BC7 | 6BC5 | 6BC3 | 6BC4 | 6BC2 |
*Number in parentheses represents values in the highest-resolution shell.