Figure 4.

Sequence architecture surrounding the male specific region in three fish. Sequence reads from three fish identifying the junction point boundary of the male specific region. Reads positioned with high map quality in the correct orientation and spacing are identified as linked grey pairs. Reads mapping with high quality, but who’s mate is mapped elsewhere on the genome, are visualised as an unlinked read. The colour of unlinked reads identify the chromosomal location of their mate pair, with green signifying Ssa03 and brown Ssa06. Additional nomenclature and explanation is given by the developers of the Integrated Genome Viewer²⁶. Read mapping is shown for three animals. A female (top panel) and two males.