Table 7.
Marker-trait associations identified through General linear model (GLM) and Mixed linear model (MLM) using phenotypic data of season 2011–2012 and 2012–2013.
| Traits | SSR marker ID | LG@ | SEASON 2011–2012 | SEASON 2012–2013 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| GLM | MLM | GLM | MLM | |||||||
| R2 (%) | P-value | R2 (%) | P-value | R2 (%) | P-value | R2 (%) | P-value | |||
| OIL CONTENT | ||||||||||
| NGSaf_15 | 3 | 22.3 | 1.363E-5 | 10.4 | 0.0436 | 23.4 | 6.85E-06 | 16 | 0.004 | |
| NGSaf_148 | 7 | – | – | – | – | 11.5 | 0.02 | – | – | |
| NGSaf_201 | 11 | 12.9 | 0.011 | – | – | – | – | – | – | |
| NGSaf_255 | 1 | 9.7 | 0.033 | – | – | 16 | 0.001 | – | – | |
| NGSaf_300 | 12 | 16.7 | 6.026E-4 | 16.2 | 0.016 | 17.9 | 2.99E-04 | 13.8 | 0.042 | |
| OLEIC ACID | ||||||||||
| NGSaf_67 | 7 | 11.4 | .005 | 11.4 | 0.017 | 11.6 | 0.004 | 11.6 | 0.016 | |
| NGSaf_210 | 4 | – | – | 14.3 | 0.031 | – | – | 14.6 | 0.028 | |
| NGSaf_309 | 5 | – | – | 34.1 | .002 | – | – | 34 | 0.002 | |
| LINOLEIC ACID | ||||||||||
| NGSaf_67 | 7 | 10.9 | 0.006 | 10.9 | 0.021 | – | – | 16.7 | 0.039 | |
| NGSaf_83 | 3 | – | – | – | – | 12.4 | 0.014 | – | – | |
| NGSaf_155 | 10 | – | – | – | – | 19.1 | 0.041 | – | – | |
| NGSaf_210 | 4 | 14.3 | 0.013 | 14.4 | 0.031 | 14 | 0.007 | 17.9 | 0.004 | |
| NGSaf_309 | 5 | – | – | 34.1 | 0.002 | – | – | – | – | |
| 100-SEED WEIGHT | ||||||||||
| NGSaf_101 | 4 | – | – | – | – | 8.9 | 0.006 | 15.3 | 0.034 | |
| NGSaf_306 | 6 | 14.7 | 0.031 | 24.52 | 0.011 | 13 | 0.034 | – | – | |
| NGSaf_309 | 5 | 24.1 | 4.2291E-4 | 22.9 | 0.044 | 15.5 | 0.022 | – | – | |
| PLANT HEIGHT | ||||||||||
| NGSaf_23 | 6 | 10 | 0.009 | – | – | – | – | – | – | |
| NGSaf_83 | 3 | 12.5 | 0.013 | – | – | – | – | – | – | |
| NGSaf_101 | 4 | 14.1 | 0.019 | – | – | 12.2 | 0.049 | – | – | |
| NGSaf_156 | 6 | 11.8 | 0.023 | – | – | 13.7 | 0.01 | 13.9 | 0.033 | |
| NGSaf_173 | 5 | 10.6 | 3.84E-4 | 4.4 | 0.027 | – | – | |||
| NGSaf_296 | 6 | 14.7 | 0.007 | – | – | 12.7 | 0.021 | 13.1 | 0.018 | |
| NUMBER OF CAPITULA PER PLANT | ||||||||||
| NGSaf_279 | 6 | 7.4 | 0.037 | 9.3 | 0.037 | 8.1 | 0.024 | 8.5 | 0.051 | |
| NGSaf_309 | 5 | 15.4 | 0.023 | 25.7 | 0.023 | – | – | – | – | |
| NUMBER OF PRIMARY BRANCHES | ||||||||||
| NGSaf_15 | 3 | – | – | – | – | 11.8 | 0.008 | 12.4 | 0.021 | |
| NGSaf_83 | 3 | 13.3 | 0.009 | – | – | 10.5 | 0.037 | 10.5 | 0.047 | |
| NGSaf_279 | 6 | 8.9 | 0.015 | 10.8 | 0.018 | 8 | 0.024 | 8.9 | 0.043 | |
| DAYS TO 50% FLOWERING | ||||||||||
| NGSaf_92 | 9 | – | – | 11.4 | 0.014 | 7.9 | 0.026 | 11.6 | 0.014 | |
| NGSaf_101 | 4 | 12.6 | 0.037 | – | – | – | – | – | – | |
| NGSaf_201 | 11 | 11.9 | 0.017 | 11.4 | 0.014 | 11.8 | 0.019 | – | – | |
| NGSaf_255 | 1 | 10.7 | 0.021 | – | – | – | – | – | – | |
| NGSaf_296 | 6 | – | – | – | – | 11.1 | 0.043 | – | – | |
@
Linkage group; R2, correlation coefficient.