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. 2018 Apr 5;19:237. doi: 10.1186/s12864-018-4617-x

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — Accuracy of imputation. Accuracy of imputation to sequence variants in Holstein and Jersey cattle was assessed for sequence variants on chromosome 14. The accuracy of imputing genotypes was calculated from sequence genotypes of randomly selected 25 animals per breed from 1000 bull genomes Run4 were masked to those on the Illumina BovineHD BeadChip, then all the sequence variants were imputed using FImpute [25] with all other sequences (N = 1122) as a reference. Accuracy was the squared correlation between the imputed genotypes and true sequence variant genotypes