Table 3.

a. Genetic Variants Associated with Carotid IMT in European Americans (p < 1.0E-4)
Chr.	SNP	Position, bpa	Gene/Nearest Gene	Loc.	A1b	MAFc	BETA	SE	Pf
15	rs1867148	73127038	PPCDC	I	C	0.44	−0.2804	0.06064	5.11E-06
13	rs323453	104232379	LOC728183/DAOA	IG	G	0.34	−0.2724	0.06346	2.23E-05
1	rs4846566	217797888	LOC728510/ZC3H11B	IG	T	0.01	−1.186	0.2777	2.46E-05
2	rs12987042	38518674	ARL6IP2/RPLPO-like	IG	A	0.36	−0.2608	0.0619	3.13E-05
15	rs6495122	72912698	CPLX3/ULK3	IG	A	0.42	−0.2525	0.06149	4.90E-05
1	rs2645091	2214505	SKI	I	T	0.15	−0.3511	0.08741	7.07E-05
16	rs17821532	52504199	FTO	I	A	0.05	−0.7006	0.1751	7.58E-05
6	rs7742814	119185974	C6orf204/ASF1A	IG	G	0.36	0.2555	0.06462	9.09E-05
11	rs4387380	5824023	OR52E6/OR52E8	IG	C	0.03	−0.8226	0.2085	9.45E-05

b. Genetic Variants Associated with Plaque in European Americans (p < 1.0E-4)
Chr.	SNP	Position, bpa	Gene/Nearest Gene	Loc	A1b	MAFc	ORd	95% CIe	Pf
12	rs515291	38689259	SLC2A13	I	G	0.32	0.4987	0.36–0.69	3.09E-05
11	rs10501399	68979039	MYEOV/CCND1	IG	T	0.09	0.2938	0.16–0.52	3.34E-05
15	rs692390	39274282	EXDL1	I	A	0.19	0.4138	0.27–0.63	4.30E-05
5	rs6887230	148706339	GRPEL2	I	G	0.30	2.02	1.4–2.8	5.61E-05
17	rs2070776	59361230	CD79B	C (ns)	T	0.33	0.5033	0.36–0.71	6.68E-05
16	rs3785233	7607511	A2BP1	I	C	0.16	0.419	0.27–0.65	9.49E-05
6	rs10948573	50800310	TFAP2D	I	G	0.37	2.044	1.4–2.9	9.68E-05

Chr. = chromosome; SNP = single nucleotide polymorphism;

^aBased on NCBI Build36/130 (hg18); Loc = Location; I = Intron; IG = Intergenic;

^bA1 = minor allele;

^cMAF = minor allele frequency;

^cOR = Odds Ratio;

^eCI = Confidence Interval;

^fp values ranked from low to high.