Table 1. Best-fit parameters for chromosomes 3 and 5.
Chr | N | B | Ea | Bs | Be | Bd | Smax | Bsmax | A | L | cL | cR | M | T2prob |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
5 | 56 | 1 | 0.6 | 0.4 | 0.5 | 0.01 | 4.5 (15) | 1 | 1 | 1 (0.54) | 0.8 | 1.05 | 1 | 0.0095 (0.0155) |
3 | 49 | 1 | 0.6 | 0.5 | 0.65 | 0.01 | 1 (2.03) | 1 | 1 | 0.9 (0.641) | 1.5 | 1.5 | 1 | 0.01 (0.0162) |
Values in brackets are those used to achieve a 13% increase in crossovers. Chr, chromosome; N = number of precursor sites. Model parameters are defined as follows (see White et al. 2017; Zhang et al. 2014): B= Precursor distribution among bivalents (0 = Poisson, 1 = constant), E= Precursor distribution along bivalents (0 = random, 1 = even), Bs = Black hole (centromere) start position, Be= Black hole (centromere) end position, Bd= Precursor density within black hole relative to rest of bivalent, Smax= Designation driving force (Progressively increased to Smax during simulation), Bsmax= Distribution of Smax among bivalents. (0 = Poisson, 1 = constant), A= Determines distribution of precursor sensitivities. Default A = 1. L= Proportion of bivalent over which the interference signal propagates. cL / cR: End effects on interference (Left/Right) where 0 = unclamped – behaves as if there was a CO at the end of the chromosome and 1 = clamped - behaves as if there was not a CO at the end of the chromosome, M= Efficiency with which CO-designation matures to eventual CO, T2prob= Probability of a precursor site becoming a class II CO.
Whole chromosomes were simulated, with best-fit parameters based on Fluorescent Tagged Line-derived crossover and coefficient of coincidence values.