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. 2018 Apr 5;19:238. doi: 10.1186/s12864-018-4630-0

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 2 — Finding the expected motif with TrawlerWeb, RSAT peak-motifs, and MEME-ChIP. Alignment of the closest primary (no.1) and secondary (no.2) motif to the expected binding site identified for each motif discovery tool for the five species a Danio rerio, b Arabidopsis thaliana, c Mus musculus, d Drosophila melanogaster, and e Homo sapiens. f For each tool, Similarity Distance of the closest primary (no.1) and secondary (no.2) motif to the expected binding site. Motifs of 6 nucleotides (nt) length were represented for Su(H) and Sox15.1, and 7 nt for MEF2A, TOC1, and Zic3.2. MEME did not find any motif for Zic3.2, motif found by DREME was used