Table 2. Identification of uORFs in the EBV genome.
| Proposed nomenclature | Length of the encoded peptide [aa] | Gene coordinates in M81 | Potentially regulated genes | Start codon |
|---|---|---|---|---|
| Cp uORF1 | 1 | 11140–11145 | EBNA-LP & other EBNAs (Cp) | AUG |
| Cp uORF2 | 2 | 11229–11237 | EBNA-LP & other EBNAs (Cp) | AUG |
| Cp uORF3 | 1 | 11395–11400 | EBNA-LP & other EBNAs (Cp) | AUG |
| Cp uORF4 | 1 | 11341–11346 | EBNA-LP & other EBNAs (Cp) | AUG |
| BHLF1 uORF1 | 35 | 40361–40254 | BHLF1 | CUC |
| BHLF1 uORF2 | 20 | 40518–40456 | BHLF1 | CUG |
| BHLF1 uORF3 | 7 | 40563–40456 | BHLF1 | UUG |
| Y2 uORF | 7 | 35565–35588 | EBNA2; BHRF1; EBNA1; EBNA3A-C | AUG |
| BHRF1 uORF1 | 14 | 41658–41702 | BHRF1 | CUG |
| BHRF1 uORF2 | 74 | 41726–41914 | BHRF1 | CUG |
| BFLF2 uORF1 | 12 | 44838–44800 | BFLF2 | CUG |
| BFLF2 uORF2 | 30 | 44885–44793 | BFLF2 | AUG |
| BFRF1 uORF | 10 | 46698–46730 | BFRF1 | UUG |
| BFRF3 uORF1 | 25 | 49246–49323 | BFRF3 | ACG |
| BFRF3 uORF2 | 41 | 49310–49435 | BFRF3 | UUG |
| U uORF | 6 | 55343–55363 | EBNA1; EBNA3A-C | AUG |
| BORF2 uORF | 17 | 64134–64187 | BORF2 | GUG |
| BKRF3 uORF1 | 45 | 97899–98036 | BKRF3 | CUG |
| BKRF3 uORF2 | 27 | 97953–98036 | BKRF3 | CUG |
| BDLF3.5 uORF | 8 | 116982–116956 | BDLF3.5 | AUG |
| BcLF1 uORF | 11 | 125269–125234 | BcLF1 | CUC |
| BXLF2 uORF1 | 24 | 130846–130772 | BXLF2 | UUG |
| BXLF2 uORF2 | 30 | 130803–130711 | BXLF2 | AUG |
| LMP2A uORF | 20 | 165917–165979 | LMP2A | UUG |
| LMP1 uORF | 15 | 168919–168872 | LMP1 | CUG |
uORF: upstream open reading frame.
aa: amino acids.