Table 2.
Results of CRISPR sequences blast against the phage community revealing the presence of bacteria of the genera Enterobacter, Enterococcus, Escherichia, Klebsiella, Veillonella, and Salmonella.
| Pool | Contig sizea | Spacer CRISPR sequence | E-valueb | Accession no.c | Bacteria species | Family |
|---|---|---|---|---|---|---|
| P01 | 37308 | CCAGCGGGAATGTGCCGGGTTCAACTGGACGC | 7.05e-09 | NZ_CP007731 | Klebsiella pneumoniae subsp. pneumoniae KPNIH27 | Enterobacteriaceae |
| P01 | 18455 | CTGTTGGCAAGCCAGGATCTGAACAATACCGT | 4.21e-11 | NZ_CP018957 | Escherichia coli strain Ecol_316 | Enterobacteriaceae |
| P01 | 22199 | CCTGATTGATGGCTTCTTTGATGTCAAACCGA | 4.21e-11 | NZ_CP018957 | Escherichia coli strain Ecol_316 | Enterobacteriaceae |
| P02 | 41734 | GGTTCAAATCCTCTCGTGCCGACCAAAAACAC | 4.21e-11 | NC_009800 | Escherichia coli HS | Enterobacteriaceae |
| P02 | 38384 | GGTCCGACTGCGAGCGGTCAGAAATCAATTTTAGGG | 3.24e-13 | NC_013520 | Veillonella parvula DSM 2008 | Veillonellaceae |
| P02 | 41734 | AGCCAGTCCGCATCTCGCCAAAAACCGTTAAC | 4.21e-11 | NC_013850 | Klebsiella michiganensis strain KCTC 1686 | Enterobacteriaceae |
| P02 | 41734 | CCAGCGGGAATGTGCCGGGTTCAACTGGACGC | 4.21e-11 | NZ_CP007731 | Klebsiella pneumoniae subsp. pneumoniae KPNIH27 | Enterobacteriaceae |
| P02 | 41734 | ATCGTGGCGATCAGGTGTGACACCTCGGAAGA | 5.45e-10 | NZ_CP017184 | Enterobacter cloacae complex ‘Hoffmann cluster IV’ strain DSM 16690 | Enterobacteriaceae |
| P07 | 12819 | GCAAAATACCAGGTCGCCCCAATCTGTCGCGA | 1.96e-09 | NC_016612 | Enterococcus faecalis str. Symbioflor 1 | Enterobacteriaceae |
| P07 | 29346 | ATGAACTAAATGTTTCAGATTCTCAAATAA | 6.55e-09 | NC_019770 | Salmonella enterica subsp. enterica serovar Montevideo | Enterococcaceae |
| P16 | 22046 | AGCCAGTCCGCATCTCGCCAAAAACCGTTAAC | 4.21e-11 | NC_013850 | Klebsiella variicola At-22 | Enterobacteriaceae |
| P16 | 22046 | CCAGCGGGAATGTGCCGGGTTCAACTGGACGC | 4.21e-11 | NZ_CP007731 | Klebsiella pneumoniae subsp. pneumoniae KPNIH27 | Enterobacteriaceae |
| P16 | 22046 | TAGCCAACCTGTAAGTAATCGTGATGAGTTGC | 4.21e-11 | NZ_CP019403 | Salmonella enterica subsp. enterica serovar Apapa str. SA20060561 | Enterobacteriaceae |
| P17 | 8125 | GAGGGGAATGGACAAGGAACGGAGAACACTTCAGACCA | 2.78e-14 | NC_013520 | Veillonella parvula DSM 2008 | Veillonellaceae |
| P18 | 19208 | AAGAGGAAAAGGAATTTCGCCACTGTATATGG | 4.21e-11 | NZ_CP007222 | Salmonella enterica subsp. enterica serovar Montevideo | Enterobacteriaceae |
a
Contigs identified as phage by Virsorter.
b
E-value the CRISPR spacer and phage.
c
Accession number of bacteria species corresponding to the CRISPR spacer.