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. 2017 Dec 30;7(4):gix134. doi: 10.1093/gigascience/gix134

Table 1:

Sequence datasets used in various stages of HapMap 3

Coverage per taxon
Dataset No. of taxa Minimum Maximum Average 3.1.1 3.2.1unimp 3.2.1imp
HapMap2 103 1 18.5 4.1 + + +
Hapmap2 extra 44 4.2 42 11.5 + + +
CAU 725 0.06 36.8 1.75 + + +
CIMMYT/BGI 89 1.1 19 11 + + +
282–×2 271 0 9 2.2 - + +
282–×4 270 0.6 34.5 4.4 - + -
German [2] 31 8.3 59 17.4 - + +

Taxa from sets “HapMap2,” “HapMap2 extra,” and “CAU” partially overlap. The “282” libraries, sequenced twice, represent 271 taxa. A “+” means that the dataset was used in a given stage, “-” that it was not.