Table 1:
Sequence datasets used in various stages of HapMap 3
Coverage per taxon | |||||||
---|---|---|---|---|---|---|---|
Dataset | No. of taxa | Minimum | Maximum | Average | 3.1.1 | 3.2.1unimp | 3.2.1imp |
HapMap2 | 103 | 1 | 18.5 | 4.1 | + | + | + |
Hapmap2 extra | 44 | 4.2 | 42 | 11.5 | + | + | + |
CAU | 725 | 0.06 | 36.8 | 1.75 | + | + | + |
CIMMYT/BGI | 89 | 1.1 | 19 | 11 | + | + | + |
282–×2 | 271 | 0 | 9 | 2.2 | - | + | + |
282–×4 | 270 | 0.6 | 34.5 | 4.4 | - | + | - |
German [2] | 31 | 8.3 | 59 | 17.4 | - | + | + |
Taxa from sets “HapMap2,” “HapMap2 extra,” and “CAU” partially overlap. The “282” libraries, sequenced twice, represent 271 taxa. A “+” means that the dataset was used in a given stage, “-” that it was not.