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. 2018 Apr 3;74(Pt 4):321–331. doi: 10.1107/S2059798318002838

Table 1. Data-collection and refinement statistics.

Values in parentheses are for the highest resolution shell.

  Apo (PDB entry 6ayy) T84A (PDB entry 6ayv) T84S (PDB entry 6ayu)
Wavelength (Å) 0.97856 0.97856 0.97872
Resolution range (Å) 19.68–2.60 (2.69–2.60) 38.77–2.30 (2.38–2.30) 37.78–2.20 (2.28–2.20)
Space group P6122 P6122 P6122
Unit-cell parameters (Å, °) a = b = 131.54, c = 144.35, α = β = 90, γ = 120 a = b = 131.24, c = 144.15, α = β = 90, γ = 120 a = b = 130.89, c = 142.85, α = β = 90, γ = 120
Total reflections 481839 1042914 406039
Unique reflections 23145 (2254) 33106 (3247) 37186 (3651)
Multiplicity 21.6 (22.1) 23.7 (21.4) 10.8 (10.6)
Completeness (%) 99.6 (99.6) 99.9 (100.0) 100.0 (100.0)
Mean I/σ(I) 44.8 (1.7) 55.0 (2.1) 35.7 (2.1)
Wilson B factor (Å2) 62.1 49.5 49.2
R merge 0.079 (1.806) 0.125 (2.314) 0.082 (1.326)
R p.i.m. 0.017 (0.456) 0.026 (0.469) 0.025 (0.426)
CC1/2 (%) 95.2 (67.2) 97.4 (69.1) 94.8 (90.7)
Reflections used in refinement 23137 (2254) 33102 (3247) 37185 (3651)
Reflections used for R free 1116 (112) 1674 (137) 1831 (193)
R work 0.211 (0.269) 0.190 (0.235) 0.224 (0.281)
R free § 0.265 (0.349) 0.247 (0.286) 0.258 (0.304)
No. of non-H atoms 4558 5079 4626
Root-mean-square deviations
 Bond lengths (Å) 0.009 0.009 0.008
 Bond angles (Å) 1.27 1.30 1.30
Ramachandran plot
 Favored (%) 94.6 96.8 96.1
 Allowed (%) 4.9 3.0 3.6
 Outliers (%) 0.5 0.2 0.3
Rotamer outliers (%) 0.0 0.6 0.2
Clashscore 11.0 10.6 8.7
Average B factor (Å2) 68.3 58.5 58.2

R merge = Inline graphic Inline graphic, where 〈I(hkl)〉 is the mean I(hkl) value for all symmetry-related observations of that reflection.

R work = Inline graphic Inline graphic, where F obs and F calc are the observed and calculated structure-factor amplitudes, respectively.

§

R free is calculated using 5% of the total reflections, which were randomly selected and were not used in refinement.