Table 1. Data-collection and refinement statistics.
Apo (PDB entry 6ayy) | T84A (PDB entry 6ayv) | T84S (PDB entry 6ayu) | |
---|---|---|---|
Wavelength (Å) | 0.97856 | 0.97856 | 0.97872 |
Resolution range (Å) | 19.68–2.60 (2.69–2.60) | 38.77–2.30 (2.38–2.30) | 37.78–2.20 (2.28–2.20) |
Space group | P6122 | P6122 | P6122 |
Unit-cell parameters (Å, °) | a = b = 131.54, c = 144.35, α = β = 90, γ = 120 | a = b = 131.24, c = 144.15, α = β = 90, γ = 120 | a = b = 130.89, c = 142.85, α = β = 90, γ = 120 |
Total reflections | 481839 | 1042914 | 406039 |
Unique reflections | 23145 (2254) | 33106 (3247) | 37186 (3651) |
Multiplicity | 21.6 (22.1) | 23.7 (21.4) | 10.8 (10.6) |
Completeness (%) | 99.6 (99.6) | 99.9 (100.0) | 100.0 (100.0) |
Mean I/σ(I) | 44.8 (1.7) | 55.0 (2.1) | 35.7 (2.1) |
Wilson B factor (Å2) | 62.1 | 49.5 | 49.2 |
R merge † | 0.079 (1.806) | 0.125 (2.314) | 0.082 (1.326) |
R p.i.m. | 0.017 (0.456) | 0.026 (0.469) | 0.025 (0.426) |
CC1/2 (%) | 95.2 (67.2) | 97.4 (69.1) | 94.8 (90.7) |
Reflections used in refinement | 23137 (2254) | 33102 (3247) | 37185 (3651) |
Reflections used for R free | 1116 (112) | 1674 (137) | 1831 (193) |
R work ‡ | 0.211 (0.269) | 0.190 (0.235) | 0.224 (0.281) |
R free § | 0.265 (0.349) | 0.247 (0.286) | 0.258 (0.304) |
No. of non-H atoms | 4558 | 5079 | 4626 |
Root-mean-square deviations | |||
Bond lengths (Å) | 0.009 | 0.009 | 0.008 |
Bond angles (Å) | 1.27 | 1.30 | 1.30 |
Ramachandran plot | |||
Favored (%) | 94.6 | 96.8 | 96.1 |
Allowed (%) | 4.9 | 3.0 | 3.6 |
Outliers (%) | 0.5 | 0.2 | 0.3 |
Rotamer outliers (%) | 0.0 | 0.6 | 0.2 |
Clashscore | 11.0 | 10.6 | 8.7 |
Average B factor (Å2) | 68.3 | 58.5 | 58.2 |
R merge = , where 〈I(hkl)〉 is the mean I(hkl) value for all symmetry-related observations of that reflection.
R work = , where F obs and F calc are the observed and calculated structure-factor amplitudes, respectively.
R free is calculated using 5% of the total reflections, which were randomly selected and were not used in refinement.