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. Author manuscript; available in PMC: 2019 Apr 10.
Published in final edited form as: J Chem Theory Comput. 2018 Mar 6;14(4):2084–2108. doi: 10.1021/acs.jctc.7b01169

Figure 19.

Figure 19

The rCAAU refolding simulation. Time 0 is the end of trajectory 8 at 300ns, at which the rCAAU tetramer was totally unfolded (no stacking in the structure, see the RMSD of trajectory 8 in Figure S25B). The rCAAU structures observed in the simulation are shown above and below the plot. Color scheme in the structure model: green, C1; blue, A2; red, A3; black, U4. At ~865 ns, the tetramer folded to A-form stacking structure.