Table 1.
Genome assembly statistics for haddock (melAeg) compared with an ALLPATHS-LG assembly and two assemblies of Atlantic cod, one draft based on PacBio and 454 reads (GM_CA454PB) and the final gadMor2 assembly
| melAeg | ALLPATHS-LG | GM_CA454PB | gadMor2 | |
|---|---|---|---|---|
| Length assembly (Mbp) | 653 | 592 | 681 | 644 |
| N50 scaffold (kbp) | 209 | 169 | 272 | 1150 |
| N50 contig (kbp) | 78 | 4.4 | 95 | 116 |
| CEGMA complete (% of 458 genes) | 439 (96%) | 428 (93%) | 431 (94%) | 435 (95%) |
| BUSCO single | 4041 (88%)a | 3562 (78%)a | 3819 (83%)a | 4160 (91%)a |
| BUSCO duplicated | 128 (2.8%)a | 92 (2.0%)a | 117 (2.6%)a | 127 (2.8%)a |
| BUSCO fragmented | 203 (4.4%)a | 407 (8.8%)a | 359 (7.8%)a | 139 (3.0%)a |
| BUSCO missing | 212 (4.6%)a | 523 (11%)a | 289 (6.3%)a | 158 (3.4%)a |
a% of 4584 genes