Table 4.
The number of MHCI found in the haddock and cod assemblies based on different criteria. The BLAST-based reports open reading frames for the hits in the final assemblies, while the PFAM domain-based report the number of domains found in the unitig assemblies that underlie the final assemblies
| domain | Haddock | Cod | |
|---|---|---|---|
| BLAST-based search (in melAeg and gadMor2) | alpha 1 + 2 + 3 | 10 | 13 |
| alpha 1 | 2 | 13 | |
| alpha 2 | 0 | 7 | |
| alpha 3 | 3 | 16 | |
| alpha 1 + 2 | 2 | 0 | |
| alpha 2 + 3 | 3 | 4 | |
| PFAM domain based search in unitig assemblies | first part (alpha 1) | 30 | 69 |
| last part (alpha 2) | 27 | 70 |