Table 2.

The Top 25 Differentially Expressed Genes between Pulmonary Nontuberculous Mycobacterial Cases and Control Subjects

Rank	Gene Name	Entrez ID	Fold Change	d-Statistic	Name
1	FLJ45825	100505530	1.657	2.646	Uncharacterized LOC100505530
2	GZMK	3003	1.61	2.857	Granzyme K (granzyme 3; tryptase II)
3	TARP	445347	1.609	2.619	TCR γ alternate reading frame protein
4	TARP	445347	1.609	2.619	TCR γ alternate reading frame protein
5	XCL2	6846	1.553	3.269	Chemokine (C motif) ligand 2
6	A2M	2	1.507	2.293	α-2-macroglobulin
7	CRTAM	56253	1.465	3.57	Cytotoxic and regulatory T cell molecule
8	PMS2P1	5379	1.453	4.053	Postmeiotic segregation increased 2 pseudogene 1
9	FCRL3	115352	1.446	3.26	Fc receptor-like 3
10	PZP	5858	1.435	2.275	Pregnancy-zone protein
11	TIGIT	201633	1.4	3.333	T cell immunoreceptor with Ig and ITIM domains
12	PPIH	10465	1.393	2.897	Peptidylprolyl isomerase H (cyclophilin H)
13	AK5	26289	1.39	2.515	Adenylate kinase 5
14	MUC12	10071	1.39	2.388	Mucin 12, cell surface associated
15	IFNG	3458	1.382	2.622	IFN, γ
16	FAHD2A	51011	1.364	3.021	Fumarylacetoacetate hydrolase domain containing 2A
17	SMA4	11039	1.361	3.602	Glucuronidase, β pseudogene
18	VSIG1	340547	1.356	2.784	V-set and immunoglobulin domain containing 1
19	SAMD3	154075	1.35	2.367	Sterile α motif domain containing 3
20	XCL1	6375	1.348	2.247	Chemokine (C motif) ligand 1
21	IL2RB	3560	1.347	2.242	IL-2 receptor, β
22	PSPH	5723	1.339	2.232	Phosphoserine phosphatase
23	LDHB	3945	1.336	2.312	Lactate dehydrogenase B
24	NELL2	4753	1.323	2.276	NEL-like 2 (chicken)
25	NFATC2	4773	1.322	2.804	Nuclear factor of activated T cells, cytoplasmic, calcineurin-dependent 2

Definition of abbreviations: ITIM = immunoreceptor tyrosine-based inhibition motif; TCR = T-cell receptor.

Genes are ranked by fold change; all displayed decreased expression in pulmonary nontuberculous mycobacterial cases.