Table 2. Previously unreported AK2 missense variants detected in clinical trial participants located in Bangkok, Thailand, Cape Town, South Africa, and New York City, USA.
Geographic Location | Variant (ref.>alt.) | cDNA Position | Coding DNA Sequence Position | Protein Position | Amino Acid Substitution (ref.>alt.) | SIFT Prediction | PolyPhen Prediction |
---|---|---|---|---|---|---|---|
Bangkok | T>C | 699 | 616 | 206 | I>V | tolerated(0.38) | benign(0.063) |
Cape Town | G>A | 106 | 23 | 8 | A>V | tolerated(0.27) | benign(0.002) |
Cape Town | T>C | 166 | 83 | 28 | K>R | deleterious(0) | possibly_damaging(0.693) |
Cape Town | G>A | 247 | 164 | 55 | A>V | deleterious(0) | possibly_damaging(0.774) |
Cape Town | C>T | 258 | 175 | 59 | E>K | tolerated(0.29) | benign(0.01) |
Cape Town | C>T | 312 | 229 | 77 | E>K | deleterious(0.01) | possibly_damaging(0.656) |
New York City | A>C | 139 | 56 | 19 | V>G | deleterious(0) | possibly_damaging(0.882) |
New York City | C>T | 237 | 154 | 52 | A>T | deleterious(0.01) | possibly_damaging(0.859) |
New York City | T>C | 267 | 184 | 62 | K>E | tolerated(0.59) | benign(0.134) |
New York City | C>T | 546 | 463 | 155 | E>K | tolerated(0.59) | benign(0.187) |
New York City | G>A | 664 | 581 | 194 | T>I | deleterious(0) | probably_damaging(0.997) |
New York City | T>C | 699 | 616 | 206 | I>V | tolerated(0.38) | benign(0.063) |
New York City | T>A | 699 | 616 | 206 | I>F | deleterious(0.03) | benign(0.288) |
Twelve previously unreported genetic missense variants were detected in 11 individuals out of 505 individuals sequenced for the coding DNA reference sequence NM_001625.3. All individuals that had detectable variants were heterozygous for those variants. One individual from Cape Town had two detectable missense variants and one individual from New York City had two detectable missense variants. Across the three geographic locations where individuals were sequenced for AK2, one AK2 variant was found in both Bangkok and New York City but not in Cape Town.