Table 1.
Sample information, sequencing summary, and target enrichment results for the Leguminosae baits set
| Species | Tribe/Subtribe | Voucher (Herbarium)a | Collection year | Material | Raw reads (paired) | Reads mapped | % reads on target | Genes recovered (% of baits) | Final gene occupancy | No. paralogs |
|---|---|---|---|---|---|---|---|---|---|---|
| Abrus pulchellus Thwaites | Abreae | A. N. Egan 20130782 (US) | 2013 | Silica gel | 6,895,312 | 2,215,590 | 32 | 479 (94.5%) | 395 | 52 |
| Camptosema ellipticum (Desv.) Burkart | Diocleae | A. Macedo 5501 (US) | 1989 | Herbarium | 452,283 | 75,119 | 17 | 286 (56.4%) | 222 | 3 |
| Canavalia gladiata (Jacq.) DC. | Diocleae | A. N. Egan 12‐278 (US) | 2012 | Silica gel | 5,662,329 | 1,598,816 | 28 | 494 (97.4%) | 412 | 42 |
| Chadsia grevei Drake | Millettieae | Lewis 509 (US) | 1993 | Herbarium | 4,944,016 | 1,099,659 | 22 | 492 (97.0%) | 409 | 32 |
| Clitoria ternatea L. | Phaseoleae/Clitoriinae | Doyle 1600 (BH) | 2010 | Fresh | 11,050,854 | 3,045,157 | 28 | 482 (95.1%) | 399 | 34 |
| Cologania biloba (Lindl.) G. Nicholson | Phaseoleae/Glycininae | Sousa 11352 (K) | 1985 | Herbarium | 6,002,204 | 1,929,522 | 32 | 478 (94.3%) | 395 | 21 |
| Cullen corallum J. W. Grimes | Psoraleeae | Mitchell 7826 (PERTH) | 2004 | Herbarium | 7,391,386 | 2,797,850 | 38 | 498 (98.2%) | 415 | 41 |
| Deguelia negrensis (Benth.) Taub. | Millettieae | Rimachi 11293 (US) | 1995 | Herbarium | 6,275,432 | 1,986,326 | 32 | 497 (98.0%) | 414 | 37 |
| Desmodium tortuosum (Sw.) DC. | Desmodieae/Desmodiinae | A. N. Egan 11‐39 (US) | 2011 | Silica gel | 4,179,175 | 1,802,826 | 43 | 477 (94.1%) | 393 | 57 |
| Disynstemon paullinioides (Baker) M. Peltier | Millettieae | Phillipson 2077 (US) | 1989 | Herbarium | 2,591,240 | 1,214,746 | 47 | 474 (93.5%) | 391 | 39 |
| Dolichos falciformis E. Mey. | Phaseoleae | A. N. Egan 13‐7 (BH) | 2013 | Silica gel | 4,698,715 | 1,707,082 | 36 | 496 (97.8%) | 413 | 34 |
| Dunbaria punctata (Wight & Arn.) Benth. | Phaseoleae/Cajaninae | A. N. Egan 20130731 (US) | 2013 | Silica gel | 7,073,224 | 2,709,052 | 38 | 483 (95.3%) | 401 | 56 |
| Glycyrrhiza glabra L. | Galegeae | J. van der Maesen 8404 (US) | 2008 | Herbarium | 7,982,267 | 2,280,024 | 29 | 503 (99.2%) | 420 | 40 |
| Indigofera caudata Dunn | Indigofereae | R. P. Clark 306 (K) | 2013 | Silica gel | 6,135,960 | 1,503,920 | 25 | 496 (97.8%) | 414 | 21 |
| Kennedia prostrata R. Br. | Phaseoleae/Kennediinae | Doyle 1651 (BH) | 2010 | Fresh | 8,949,317 | 3,507,185 | 39 | 490 (96.6%) | 406 | 47 |
| Leptoderris micrantha Dunn | Millettieae | van der Burgt 1576 (US) | 2012 | Herbarium | 4,792,831 | 1,397,220 | 29 | 478 (94.3%) | 395 | 47 |
| Lespedeza cuneata (Dum. Cours.) G. Don | Desmodieae | Xubo 442 (CDBI) | 2012 | Silica gel | 4,770,559 | 1,048,745 | 22 | 490 (96.6%) | 407 | 37 |
| Macroptilium atropurpureum (DC.) Urb. | Phaseoleae/Phaseolinae | A. N. Egan 11‐5 (US) | 2011 | Silica gel | 11,672,490 | 5,637,444 | 48 | 500 (98.6%) | 417 | 54 |
| Otholobium pubescens (Poir.) J. W. Grimes | Psoraleeae | Salas 16136 (US) | 1992 | Herbarium | 5,534,886 | 2,245,553 | 41 | 501 (98.8%) | 418 | 37 |
| Platysepalum bambidiense Maesen | Millettieae | Wienngien 6284 (US) | 2008 | Herbarium | 7,985,058 | 1,919,772 | 24 | 499 (96.8%) | 415 | 45 |
| Shuteria involucrata (Wall.) Wight & Arn. | Phaseoleae | A. N. Egan 20130763 (US) | 2013 | Silica gel | 4,040,622 | 1,499,410 | 37 | 491 (96.8%) | 408 | 49 |
| Tephrosia lupinifolia DC. | Millettieae | A. N. Egan 13‐12 (US) | 2013 | Silica gel | 6,535,580 | 2,056,174 | 31 | 493 (97.2%) | 410 | 38 |
| Tripodion tetraphyllum (L.) Fourr. | Loteae | Wieringa 4847 (US) | 2003 | Herbarium | 8,322,689 | 2,119,345 | 25 | 495 (97.6%) | 411 | 24 |
| Vigna venulosa Baker | Phaseoleae | Cheek 15960 (K) | 2011 | Herbarium | 2,988,984 | 830,872 | 28 | 472 (93.1%) | 389 | 45 |
| Wisteria frutescens (L.) Poir. | Millettieae | K. Fetter s.n. (US) | 2014 | Silica gel | 11,977,761 | 3,432,741 | 29 | 499 (98.4%) | 415 | 70 |
a
Herbaria are abbreviated according to Index Herbariorum (http://sweetgum.nybg.org/science/ih/).