Table 3.
PKG isoform
|
PKG Iβ CNB-B
|
PKG II CNB-B
|
|||
---|---|---|---|---|---|
analog | 8-Br-cGMP | 8-pCPT-cGMP | PET-cGMP | 8-Br-cGMP | 8-pCPT-cGMP |
data collection | |||||
wavelength (Å) | 0.99993 | 0.99993 | 0.97741 | 0.97741 | 0.97741 |
space group | P4 212 | P1211 | P41212 | P212121 | P212121 |
cell dimensions | |||||
a, b, c (Å) | 47.01, 47.01, 102.6 | 35.51, 59.24, 67.32 | 46.29, 46.29, 102.5 | 41.62, 52.09, 68.64 | 42.21, 50.21, 65.51 |
α, β, δ (deg) | 90.00, 90.00, 90.00 | 90.00, 100.2, 90.00 | 90.00, 90.00, 90.00 | 90.00, 90.00, 90.00 | 90.00, 90.00, 90.00 |
resolution (Å) | 51.29–1.49 | 51.29–1.49 | 51.25–1.73 | 52.09–1.47 | 65.54–1.53 |
Rsym or Rmergea | 0.105(1.721) | 0.105(0.429) | 0.184(2.248) | 0.093(1.788) | 0.082(0.521) |
I/σI | 19.4(3.0) | 19.4(2.6) | 12.5(1.3) | 12.6(0.8) | 12.1(3.6) |
CC b 1/2 | 0.999(0.929) | 0.999(0.852) | 0.999(0.994) | 0.999(0.372) | 0.999(0.606) |
completeness (%) | 99.9(100) | 99(96) | 99.9(99.4) | 98.3(83.2) | 98.0(81.3) |
redundancy | 26.3(19.6) | 4.2(3.8) | 21.4(13.3) | 7.9(5.6) | 4.0(3.3) |
refinement | |||||
resolution (Å) | 42.74–1.49 | 34.95–1.49 | 42.19–1.75 | 41.49–1.47 | 39.85–1.5 |
no. reflections | 19698 | 44528 | 11850 | 25594 | 22476 |
Rwork/Rfreec | 16.93/19.90 | 16.34/18.91 | 19.34/22.65 | 16.47/18.79 | 17.95/19.84 |
no. atoms | |||||
proteins | 1998 | 3955 | 1942 | 1942 | 2277 |
ligand/ion | 37 | 175 | 47 | 154 | 100 |
water | 127 | 280 | 80 | 119 | 180 |
B-factors | |||||
protein | 25.47 | 22.09 | 33.69 | 33.69 | 18.3 |
ligand/ion | 35.42 | 18.78 | 32.68 | 33.45 | 25.5 |
water | 30.70 | 35.58 | 34.68 | 34.17 | 28.93 |
r.m.s.d deviations | |||||
bond lengths (Å) | 0.009 | 0.012 | 0.012 | 0.009 | 0.013 |
bond angles (deg) | 1.322 | 1.253 | 1.096 | 1.3 | 1.489 |
PDB ID | 5JAX | 5J48 | 5JD7 | 5JIX | 5JIZ |
Highest resolution shell is shown in parentheses.
CC1/2, Pearson correlation coefficient.
5.0% of the observed intensities was excluded from refinement for cross validation purposes.
r.m.s., root-mean-square.