Key resources table.
| Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| gene (Gaussia princeps) | gLUC | PMID: 18408930 | AY015993.1 | wild-type |
| gene (Gaussia princeps) | gLUC | PMID: 18408930 | EU372000 | human codon-optimised |
| cell line (Trypanosoma brucei) |
2T1 | PMID: 16182389 | ||
| transfected construct (Trypanosoma brucei) |
pRPa-iSL plasmid | PMID: 18588918 | 69244 | available from addgene.org |
| transfected construct (Trypanosoma brucei) |
pRPa plasmid | PMID: 18588918 | ||
| transfected construct (Trypanosoma brucei) |
pRPa-λ plasmid | this paper | see materials and methods | |
| antibody | α-gLUC | New England Biolabs | one in 1000 | |
| sequence-based reagent | EUluc5 oligonucleotide | this paper | GATCCTGCAGCTCGAGATGAAGCCCACCGAGAACAACG | |
| sequence-based reagent | EUluc3 oligonucleotide | this paper | GATCGAATTCAGATCTAAGCTTTTACAGCTTCGAGTCGCCGCCGGCGCC | |
| sequence-based reagent | WTluc5 oligonucleotide | this paper | GATCCTCGAGATGAAACCAACTGAAAACAATG | |
| sequence-based reagent | WTluc3 oligonucleotide | this paper | GATCAAGCTTTTATAATTTACTATCACCACCGGCACCCTT | |
| sequence-based reagent | Lambda5 oligonucleotide | this paper | GATCAAGCTTTGCAGGGTGAGATTGTGGC | |
| sequence-based reagent | Lambda3 oligonucleotide | this paper | GATCGAATTCGCTCAGTTGTTCAGGAATATG | |
| sequence-based reagent | TUBF oligonucleotide | this paper | AGATCTTCAAACACTAGTTTAAGC | |
| sequence-based reagent | TUBR oligonucleotide | this paper | CATGATAAATAAATAGAAGTGCTTTGTTG | |
| sequence-based reagent | λF oligonucleotide | this paper | GATTCATAAGTTCCGCTGTGTGCCGCATCTC | |
| sequence-based reagent | λR oligonucleotide | this paper | GCTCAGTTGTTCAGGAATATGGTGCAGCAG | |
| commercial assay or kit | BioLux Gaussia luciferase | New England Biolabs | ||
| software, algorithm | Bowtie 2 | PMID: 22388286 | ||
| software, algorithm | SAMtools | PMID: 19505943 | ||
| software, algorithm | edgeR | PMID: 19910308 | ||
| software, algorithm | CAI calculator | http://www.umbc.edu//codon/cai/cais.php | ||
| software, algorithm | ANACONDA | http://bioinformatics.ua.pt/software/anaconda/ | ||
| online database | TriTrypDB, RRID:SCR_007043 | http://tritrypdb.org/tritrypdb/ |