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. 2018 Apr 12;13(4):e0195636. doi: 10.1371/journal.pone.0195636

Table 11. Comparison of overall success rate on the four benchmark datasets.

Algorithm Representation and method OSR (%)
Dataset 1 SubNucPred [33] SSLD and AAC based on SVM by Jackknife test 81.46
Effective Fusion Representations [4] DipPSSM with LDA based on KNN by 10-fold cross-validation ≈97
PseAAPSSM with LDA based on KNN by 10-fold cross-validation ≈84
The proposed method: CoPSSM with intelligent KLDA based on DGGA CoPSSM with KLDA based on KNN and Jackknife test 87.44
Dataset 2 Nuc-PLoc [7] Fusion of PsePSSM and PseAAC based on Ensemble classifier by Jackknife test 67.4
Effective Fusion Representations [4] DipPSSM with LDA based on KNN by 10-fold cross-validation 95.94
PseAAPSSM with LDA based on KNN by 10-fold cross-validation 88.1
The proposed method: CoPSSM with intelligent KLDA based on DGGA CoPSSM with KLDA based on KNN and Jackknife test 90.34
Dataset 3 Gneg-PLoc [34] Fusion of GO approach and PseAAC based on Ensemble classifier by Jackknife test 87.3
Nonlinear dimensionality reduction method [12] Fusion of PSSM and PseAAC with KLDA based on KNN by Jackknife test 98.77
The proposed method: CoPSSM with intelligent KLDA based on DGGA CoPSSM with KLDA based on KNN and Jackknife test 92.34
Dataset 4 Gneg-PLoc [34] Fusion of GO approach and PseAAC based on Ensemble classifier by Independent test 89.3
The proposed method: CoPSSM with intelligent KLDA based on DGGA CoPSSM with KLDA based on KNN and Independent test 94.71