Table 3. TRI gene content of fungi examined in the current study.

A gray box indicates that a TRI gene is present in the genome of a fungus, while a white box indicates the gene was not detected. Numbers within boxes indicate the number of paralogs. The Greek letter ψ indicates that a large portion of the gene is present but that it is a pseudogene.

Species	Strain	No. Locia	No. TRI Genes	TRI Gene
				1	3	4	5	6	7	8	9	10	11	12	13	14	16	17	18	22b	101
Beauveria bassiana	ARSEF 2860	1	6
Cordyceps confragosa	RCEF 1005	1	6
Cordyceps confragosa	UM487	1	6
FIESC 12	NRRL 13405	2	14
Fusarium graminearum	PH-1	3	12						Ψ						Ψ		Ψ
Fusarium longipes	NRRL 20695	3	15
Fusarium sporotrichioides	NRRL 3299	3	15
Microcylospora tardicrescens	HJS 1936	1	11		2
Myrothecium roridum	NRRL 2183	2	13					2
Spicellum ovalisporum	DAOM 186447	nd	10					2
Spicellum roseum	DAOM 209012	nd	10					2
Stachybotrys chartarum	IBT 7711	2	12			2												2	2
Stachybotrys chartarum	IBT 40288	1	9
Stachybotrys chartarum	IBT 40293	3	14			2	2	2										2	2
Stachybotrys chlorohalonata	IBT 40285	1	9
Trichoderma arundinaceum	IBT 40837	3	10
Trichoderma brevicompactum	IBT 40841	3	10
Trichothecium roseum	DAOM 195227	nd	12					3
Trichothecium roseum	DAOM 197141	nd	12					3
Trichothecium roseum	K7-1	nd	12					3

^a nd indicates that sequence assemblies do not provide a clear indication of the number of loci.

^b TRI22 was originally described as the Trichoderma homolog of the Fusarium TRI11 [17]. But here, we consider it functionally and phylogenetically distinct from TRI11 (S1 Fig).