. 2018 Apr 12;6(15):e00282-18. doi: 10.1128/genomeA.00282-18

TABLE 1.

Strain information and GenBank accession numbers for 59 Shigella isolates

Strain (reference no.)	Species	Serotype	GenBank accession no.	Chromosome size(s) (bp)	Associated plasmid size(s) (bp)	Optical map
65-6310	S. boydii	1	PTES00000000	2,603,357,^a 2,046,275^a	164,492^a	No
ATCC 8700	S. boydii	2	CP026731–CP026733	4,575,738	59,816,^a 51,078	Yes
NCTC 9850	S. boydii	3	CP026762 and CP026763	4,575,797	150,497	Yes
NCTC 9770	S. boydii	4	PSSU00000000	3,106,825,^a 1,499,125^a	202,816^a	Yes
NCTC 9733	S. boydii	5	CP026844 and CP026845	4,932,934	230,094	Yes
ATCC 12027	S. boydii	6	CP026865 and CP026866	4,680,168^a	135,321^a	Yes
NCTC 9734	S. boydii	7	CP026874 and CP026875	5,163,976^a	193,652^a	Yes
NCTC 9353	S. boydii	8	CP026797 and CP026798	4,488,529	146,337	Yes
ATCC 49812	S. boydii	9	CP026836 and CP026837	5,106,737	213,410	Yes
ATCC 12030 (SH135)	S. boydii	10	CP026867–CP026870	4,607,824^a	145,169, 52,696,^a 36,641^a	Yes
59-2708	S. boydii	11	CP026846	4,856,857	None	Yes
59-248	S. boydii	14	CP026766 and CP026767	4,678,058	209,166^a	Yes
ATCC 12034	S. boydii	15	PSSP00000000	5,100,100,^a 24,879,^a 44,022^a	251,107^a	Yes
ATCC 35964	S. boydii	16	CP026876 and CP026877	5,129,092	166,502	Yes
ATCC 35965	S. boydii	17	PSSR00000000	3,275,068,^a 1,127,682,^a 662,313^a	182,849^a	Yes
ATCC 35966	S. boydii	18	PSSS00000000	4,267,999,^a 342,076^a	128,923^a	Yes
83-578	S. boydii	19	CP026813 and CP026814	4,580,582	122,029	Yes
ATCC BAA-1247	S. boydii	20	CP026795 and CP026796	4,575,738	226,559^a	Yes
54-1621 (5)	S. boydii	Provisional 54-1621	CP026810	4,531,304^a	None	Yes
ATCC 13313	S. dysenteriae	1	CP026774 and CP026775	4,395,762	182,697	Yes
BU53M1^b (6)	S. dysenteriae	1	CP024466–CP024469	4,409,083	54,993, 115,922, 184,894	Yes
69-3818	S. dysenteriae	1	CP026777–CP026779	4,390,268	115,128,^a 202,417	Yes
07-3308	S. dysenteriae	1	CP026878 and CP026879	4,382,687	69,799	No
53-3937	S. dysenteriae	1	CP026780 and CP026781	4,382,743	67,064^a	Yes
08-3380	S. dysenteriae	1	CP026782 and CP026783	4,464,195	183,210	No
80-547	S. dysenteriae	1	CP026784 and CP026785	4,391,331	204,250^a	Yes
NCTC 9718	S. dysenteriae	1	CP026786 and CP026787	4,371,869	189,871^a	No
ATCC 9750 (Sd44)	S. dysenteriae	2	CP026824	4,971,516	None	Yes
ATCC 9751	S. dysenteriae	3	CP026825	4,699,491	None	Yes
ATCC 9753	S. dysenteriae	4	CP026840 and CP026841	4,716,399	215,925	Yes
ATCC 9764	S. dysenteriae	5	CP026872 and CP026873	4,711,098^a	166,878^a	Yes
ATCC 9754	S. dysenteriae	6	CP026842 and CP026843	4,588,477	106,437	Yes
ATCC 9752	S. dysenteriae	7	CP026838 and CP026839	4,273,636	103,367	Yes
ATCC 12021 (Sd41)	S. dysenteriae	8	CP026826 and CP026827	4,558,619	224,352^a	Yes
ATCC 12037	S. dysenteriae	9	CP026828 and CP026829	4,642,274	216,328	Yes
ATCC 12039	S. dysenteriae	10	CP026830 and CP026831	4,880,735	181,100	Yes
ATCC 12038	S. dysenteriae	11	PSSQ00000000	4,292,356,^a 99,306,^a 257,965^a	165,104^a	Yes
ATCC 49550	S. dysenteriae	12	PSST00000000	3,270,959,^a 1,465,326^a	230,788^a	Yes
ATCC 49346	S. dysenteriae	14^c	CP026832 and CP026833	4,619,326	224,419	Yes
ATCC 49347	S. dysenteriae	15^d	CP026834 and CP026835	4,684,535	99,066	Yes
2017C-4522	S. dysenteriae	Provisional 2009C-3478	CP026805 and CP026806	4,609,265	69,966	Yes
96-3162 (7)	S. dysenteriae	Provisional 96-3162	CP026821–CP026823	4,804,763	79,586, 215,820	Yes
204/96 (8)	S. dysenteriae	Provisional 204/96	CP026807–CP026809	4,800,156	79,695, 226,481	Yes
93-119 (9)	S. dysenteriae	Provisional 93-119	CP026815–CP026817	4,799,750	79,553, 226,441	Yes
96-265^e (10)	S. dysenteriae	Provisional 96-265	CP026818–CP026820	4,744,419	80,213, 195,489	Yes
E670/74 (11)	S. dysenteriae	Provisional E670/74	CP027027 and CP027028	5,036,586	149,179	Yes
73-5612	S. flexneri	1b	CP026871	4,490,153^a	None	No
ATCC 29903	S. flexneri	2a	CP026788–CP026790	4,659,463	113,130, 165,702	Yes
61-4982	S. flexneri	4b	CP026791 and CP026792	4,631,337	59,834	Yes
74-1170	S. flexneri	5a	CP026793 and CP026794	4,733,503	251,323^a	No
NCTC 9728	S. flexneri	5b	CP026799 and CP026800	4,511,010	135,368	Yes
64-5500	S. flexneri	6	CP026811 and CP026812	4,659,714	181,479	Yes
98-3193	S. flexneri	7^f	CP026776	4,508,802	None	No
04-3145	S. flexneri	7^f	CP026764 and CP026765	4,571,921	68,319	No
95-3008	S. flexneri	7^f	CP026772 and CP026773	4,516,380^a	52,051^a	Yes
94-3007^b (6)	S. flexneri	7^f	CP024473–CP024476	4,533,699	69,554, 82,833, 220,282	Yes
93-3063	S. flexneri	Y	CP026768–CP026771	4,628,330	27,054,^a 71,925,^a 220,759	Yes
89-141 (12)	S. flexneri	Provisional 89-141	CP026803 and CP026804	4,481,548	245,004^a	No
ATCC 29930	S. sonnei	NA^g	CP026801 and CP026802	4,975,028	18,973^a	Yes

Indicates genome/plasmid could not be circularized.

Two strains were previously sequenced but included here because they were part of the originally selected historical Shigella strain collection.

Proposed serotype designation for provisional serovar is E22383 (9).

Proposed serotype designation for provisional serovar is E23507 (9).

Frank Rogers, National Laboratory for Enteric Pathogens, Health Canada, Winnipeg, Canada, personal communication.

Proposed serotype designation for provisional serotype is 88-893 (94-3007).

NA, not applicable.