FIGURE 1.

Medium confidence values (MCVs) stratified by confidence value, drug susceptibility testing medium and antibiotic-resistance gene combination. In the three rows above the graph we show variants that were concordant on both media, the number of variants that had different confidence levels on liquid and solid (these are marked as “discrepant variants” and are listed in full in online supplementary material 9) and unique variants for which confidence levels were available on only one of the two media.