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. 2018 Apr 13;92(9):e00084-18. doi: 10.1128/JVI.00084-18

TABLE 1.

Oligonucleotide primers for mutagenesis, PCR, and sequence analysesa

Primer name Sequence (5′ to 3′)b Nucleotide positionsc
PGHN77Q-F CTGGGGGCGCTCCAGGACACGCGCATC 60986–61012
PGHN162Q-F GCGGCCGTCTTCCAGGTGACGCTGGGC 61241–61267
PGHN542Q-F GCCATCGTCAGCCAGGACAGCGCCGCG 62381–62407
PGHN604Q-F CATGGCCGGCGCCCAGTCCACCATCCC 62566–62592
PGHN627Q-F TGATGCTCTTCCCCCAAGGCACCGTGGTC 62634–62662
PgH-PSF TTCACGTCGGAGATGGGG 60611–60628
PgH-PSF2 GGAAGCCCTTCGACCAG 61875–61891
PgHK-PSR CGCGAGCCCATTTATACCC (Kanr)
PgH-PSR2 GTCGAGCAGGCTGAAGG 62055–62071 (r)
PgH-WH3 TGCACGAGAGCGACGACTACC 61479–61499
a

Only forward-strand mutagenesis primers (F) are listed, since the reverse-strand primers were exactly complementary.

b

Nonmatching nucleotides are shown in boldface.

c

Nucleotide positions in the PrV-Ka genome refer to GenBank accession number JQ809328 (66), and a reverse-strand sequencing primer is indicated (r). PgHK-PSR binds to the inserted kanamycin resistance gene (Kanr) of the PrV recombinants.