Table III.
Positions and lengths of introns in Arabidopsis SHM genes
Intron no. | Intron Length (nt)
|
||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | |
Intron | Ma | Ta | Ka | Rc | Ec | Vb | Ma | Qa | Gb | Qa | Ka | Eb | Ka | Ea | Qa | Qa | Qa | Qa | Ka | Gb | Gb | Gb | Gb |
Positiond
|
29
|
46
|
75
|
110
|
116
|
142
|
168
|
183
|
208
|
214
|
245
|
269
|
286
|
311
|
329
|
346
|
358
|
368
|
394
|
398
|
419
|
432
|
469
|
SHM1 | 106e | 171 | 95 | –f | 104 | 79 | – | 84 | – | 87 | 78 | – | – | 87 | – | 81 | – | 82 | 80 | – | – | 81 | 83 |
SHM2 | 79 | 88 | 91 | – | 80 | 93 | – | 116 | – | 172 | 81 | – | – | 90 | – | 164 | – | 130 | 328 | – | – | 287 | 84 |
SHM3 | – | – | – | 88 | – | – | 84 | – | 79 | – | 112 | – | 97 | – | 86 | – | 93 | – | 107 | – | 244 | – | – |
SHM4 | – | – | – | – | – | – | – | – | – | – | – | 409 | – | – | – | – | – | – | – | 91 | – | 93 | – |
SHM5 | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | 85 | – | 75 | – |
Intron follows the codon encoding the indicated amino acid residue.
Intron inserted between the first and second nucleotides of the codon encoding the indicated amino acid residue.
Intron inserted between the second and third nucleotides of the codon encoding the indicated amino acid residue.
Based on Arabidopsis SHM1, to which all the others were aligned. The amino acid residue listed is that of Arabidopsis SHMT1.
Intron length in nt.
Intron not present.