Table 3. Functional annotation of differentially expressed genes in longissimus dorsi muscle of pigs.
| Gene ontology | Genes | |||
|---|---|---|---|---|
| P-value | Corrected P-value | up-regulated in Pulawska pigs | up-regulated in Polish Landrace | |
| GO:0072562 blood microparticle | 1.62E-05 | 1.20E-02 | HP, IGLC | CIB2 |
| GO:0032515 negative regulation of catabolic process | 1.61E-03 | 1.16E-01 | HP, | UBE2J1 |
| GO:0018377 protein myristoylation | 2.62E-03 | 1.16E-01 | OAS2 | |
| GO:1901568 fatty acid derivative metabolic process | 4.80E-03 | 1.16E-01 | ENSSSCG00000028753 | |
| GO:0019992 diacylglycerol binding | 5.24E-03 | 1.16E-01 | CHPT1 | |
| GO:0051480 regulation of cytosolic calcium ion concentration | 5.90E-03 | 1.16E-01 | CIB2, PVALB | |
| GO:0009056 catabolic process | 6.99E-03 | 1.16E-01 | HP, ENSSSCG00000028753, OAS2 | UBE2J1 |
| GO:0009101 glycoprotein biosynthetic process | 9.32E-03 | 1.20E-01 | CIB2 | |
| GO:0005924 cell-substrate adherens junction | 3.11E-03 | 1.21E-01 | CIB2, CNN1 | |
| GO:0061631 ubiquitin conjugating enzyme activity | 1.26E-02 | 1.21E-01 | UBE2J1 | |
| GO:0031594 neuromuscular junction | 7.89E-03 | 1.21E-01 | CIB2 | |
| GO:0042158 lipoprotein biosynthetic process | 3.83E-02 | 1.48E-01 | OAS2 | |
| GO:0033559 unsaturated fatty acid metabolic process | 4.58E-02 | 1.48E-01 | ENSSSCG00000028753 | |
| GO:0005178 integrin binding | 1.73E-02 | 1.24E-01 | UBE2J1 | |
| GO:0042758 long-chain fatty acid catabolic process | 3.67E-03 | 1.48E-01 | ENSSSCG00000028753 | |
| GO:0005509 calcium ion binding | 9.71E-03 | 1.21E-01 | ENSSSCG00000028753 | |
| GO:0042383 sarcolemma | 1.65E-02 | 1.24E-01 | CIB2 | |
| GO:0031032 actomyosin structure organization | 2.43E-02 | 1.24E-01 | CNN1 | |
| Pathway | ||||
| R-SSC-1483206 glycerophospholipid biosynthesis | 4.75E-02 | 1.50E-01 | CHPT1 | |
| PWY3O-450 phosphatidylcholine biosynthesis | 3.06E-03 | 1.16E-01 | CHPT1 | |
| R-SSC-211935 fatty acids | 6.98E-03 | 1.16E-01 | ENSSSCG00000028753 | |
| R-SSC-2142753 arachidonic acid metabolism | 2.42E-02 | 1.34E-01 | ENSSSCG00000028753 | |
| R-SSC-556833 metabolism of lipids and lipoproteins | 3.78E-02 | 1.48E-01 | ENSSSCG00000028753 | CHPT1 |
| PWY-7511 protein ubiquitylation | 1.82E-02 | 1.27E-01 | UBE2J1 | |
| ssc00565 ether lipid metabolism | 2.70E-02 | 1.29E-01 | CHPT1 | |
GO-gene ontology and pathways were estimated by Kobas 3.0 and Panther Gene List