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. 2018 Apr 16;11:110. doi: 10.1186/s13068-018-1110-3

Table 3.

Identification of genome loci in A. acidocaldarius strain DSM 446 genome that encodes putative carbohydrate deacetylase enzymes

Gene locus Product name Enzyme Commission number Family Signal sequence Transmembrane helices
Aaci_0255 Polysaccharide deacetylase EC:3.1.1.72 3.5.1.- 4 No No
Aaci_0863 N-acetylglucosamine-6-phosphate deacetylase EC:3.5.1.25 3.5.1.80 9 No No
Aaci_0881 LmbE family protein EC:3.5.1.- 14 No No
Aaci_0954 LmbE family protein EC:3.5.1.- 14 No No
Aaci_1372 Polysaccharide deacetylase EC:3.1.1.72 3.5.1.- 4 Yes (28/29) No
Aaci_1443 Polysaccharide deacetylase EC:3.1.1.72 3.5.1.- 4 No No
Aaci_1912 Polysaccharide deacetylase EC:3.1.1.72 3.5.1.- 4 No No
Aaci_2070 LmbE family protein EC:3.5.1.- 14 No No

Classification of Enzyme Commission and carbohydrate deacetylase family numbers were obtained from the Carbohydrate-Active enZYme database (CAZY). Signal sequences and transmembrane helices were taken from JGI-IMG, and signal sequences were verified using the SignalP program