Table 2.
The number of known and candidate cancer genes and enrichment analysis.
| No. of genes | No. of known cancer genes | No. of candidate cancer genes | |
|---|---|---|---|
| Cluster 1 | 342 | 0 | 30 |
| Cluster 2 | 536 | 21 | 40 |
| Cluster 3 | 69 | 1 | 5 |
| Cluster 4 | 158 | 2 | 6 |
| Cluster 5 | 151 | 7 | 16 |
| Cluster 6 | 521 | 41** | 59** |
| Cluster 7 | 399 | 33** | 47** |
| Cluster 8 | 857 | 89** | 92** |
| Cluster 9 | 38 | 1 | 6 |
| Clusters | 2,219 | 131* | 194* |
| Not in clusters | 4,597 | 201 | 296 |
| Network | 6,816 | 332* | 490* |
| Not in network | 50,472 | 176 | 544 |
| Pan-cancer-wide selected genes | 4,546 | 67* | 278* |
| Not in pan-cancer-wide selected genes | 52,742 | 441 | 756 |
*Known and candidate cancer genes were enriched in clusters, networks, and PSGs compared to other genes.
**Known and candidate cancer genes were enriched in these clusters compared to other clusters and other genes in networks.