Table 1.
Bacterial genes considered in this study.
| Gene | Organism | Base pairs | GenBank accession | Clinical correlate |
|---|---|---|---|---|
| clbB | Escherichia coli strain IHE3034 | 9,620 | AM229678.1 | Part of the pks genomic island – genotoxic |
| clbN | Escherichia coli strain IHE3034 | 4,637 | AM229678.1 | Part of the pks genomic island – genotoxic |
| usp | Escherichia coli strain K-12 | 1,041 | AB027193 | Linked with urinary infections |
| cnf-1 | Escherichia coli strain A70.1 | 3,044 | U42629.1 | Linked with uncontrolled cell division |
| gelE | Enterococcus faecalis | 1,529 | D85393.1 | Increases intestinal inflammation in mice |
| tcpC | Escherichia Coli strain S107 | 924 | GQ902994.1 | Formation of kidney abscesses |
| cif | Escherichia coli strain EF33 | 849 | AY128544.1 | Cell cycle modulation |
| AMmurB | Akkermansia muciniphila | 678 | AM905291.1 | Intestinal mucin digestion |
| Housekeeping genes | ||||
| ECmurB | Escherichia coli strain K-12 | 1,029 | NC_000913.3 [Region: 4172057-4173085] | |
| EFmurB | Enterococcus faecalis strain V583 | 903 | NC_004668.1 [Region: 2642156-2643058] | |
Columns represent: gene name (grouped as genotoxic or pro-inflammatory and housekeeping genes), Organism (bacteria and strain), Base Pairs (Total number of nucleotides per gene) and GenBank Accession (Identifier of the FASTA gene sequence).