Table 3.
Trichome-related glabrous cotyledon genes in the hairy leaf AtGL3+ and ultra-hairy leaf K-5-8 lines relative to glabrous leaf B. napus cv. Westar
| ID | Bin Name | Description | Expression relative to Westar | |
|---|---|---|---|---|
| AtGL3 line | K-5-8 line | |||
| ESTs common to both transgenic lines | ||||
| bo5g002440 | Positive initiation | AN (ANGUSTIFOLIA); protein binding | 5.39 | 1.63 |
| bra024875 | " | RGA1 (REPRESSOR OF GA1-3 1); protein binding / transcription factor | 3.29 | 1.59 |
| bo9g070200 | " | RGA1 (REPRESSOR OF GA1-3 1); protein binding / transcription factor | 1.49 | 0.73 |
| bra007766 | " | FDH, KCS10 (3-KETOACYL-COA SYNTHASE 10); acyltransferase | 1.51 | 0.42 |
| bo1g116200 | Positive branching | DER1, LSR2, ENL2 | ACT2 (ACTIN 2); structural constituent of cytoskeleton | 1.53 | 1.46 |
| bra020572 | " | TUA6; structural constituent of cytoskeleton | 1.54 | 0.73 |
| bra039648 | " | TUA6; structural constituent of cytoskeleton | 1.48 | 0.55 |
| bo1g054880 | " | SPK1 (SPIKE1); GTP binding / GTPase binding / guanyl-nucleotide exchange factor | 1.51 | 0.47 |
| bra009451 | Multicellular trichomes | SIM (SIAMESE); cyclin-dependent protein kinase inhibitor | 1978.24 | 11.69 |
| bo9g178800 | " | SIM (SIAMESE); cyclin-dependent protein kinase inhibitor | 935.76 | 7.64 |
| bra027928 | Less developed | unknown protein | 1.45 | 0.42 |
| bo1g046580 | " | MRH5, GPDL2 | SHV3 (SHAVEN 3); glycerophosphodiester phosphodiesterase/ kinase | 1.14 | 0.37 |
| bra026409 | " | MRH5, GPDL2 | SHV3 (SHAVEN 3); glycerophosphodiester phosphodiesterase/ kinase | 1.13 | 0.35 |
| bo9g054590 | " | unknown protein | 1.44 | 0.24 |
| ESTs unique to the AtGL3+ line | ||||
| bra033258 | Positive initiation | AN (ANGUSTIFOLIA); protein binding | 14.72 | NA |
| bra017443 | " | RGA1 (REPRESSOR OF GA1-3 1); protein binding / transcription factor | 1.47 | NA |
| bra029388 | Distorted | EMB3009 (embryo defective 3009); transferase/ transferase, transferring acyl groups | 1.07E+301 | NA |
| bo7g097360 | " | EMB3009 (embryo defective 3009); transferase/ transferase, transferring acyl groups | 1.05E+59 | NA |
| bra004054 | Positive branching | TPS6 | ATTPS6; alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase | 3.29 | NA |
| bo3g071760 | " | DER1, LSR2, ENL2 | ACT2 (ACTIN 2); structural constituent of cytoskeleton | 1.68 | NA |
| bra022356 | " | DER1, LSR2, ENL2 | ACT2 (ACTIN 2); structural constituent of cytoskeleton | 1.64 | NA |
| bo5g117040 | " | DER1, LSR2, ENL2 | ACT2 (ACTIN 2); structural constituent of cytoskeleton | 1.55 | NA |
| bra037560 | " | DER1, LSR2, ENL2 | ACT2 (ACTIN 2); structural constituent of cytoskeleton | 1.48 | NA |
| bra008705 | Negative branching | ATMIXTA | ATMYB16 (MYB DOMAIN PROTEIN 16); DNA binding / transcription factor | 5.94 | NA |
| bo5g021100 | Endoreduplication | CYCA2;3 (CYCLIN A2;3); cyclin-dependent protein kinase regulator | 1.39 | NA |
| bo5g038710 | Trichome size | ATSAC1 (suppressor of actin 1); phosphatidylinositol-4,5-bisphosphate 5-phosphatase | 7.73 | NA |
| bo6g027740 | Less developed | MRH5, GPDL2 | SHV3 (SHAVEN 3); glycerophosphodiester phosphodiesterase/ kinase | 38.59 | NA |
| ESTs unique to the K-5-8 line | ||||
| bo8g115250 | Positive initiation | HDG2 (HOMEODOMAIN GLABROUS 2); DNA binding / transcription factor | NA | 0.43 |
| bo8g067530 | " | HDG12 (HOMEODOMAIN GLABROUS 12); transcription factor | NA | 0.27 |
| bra015401 | " | HDG2 (HOMEODOMAIN GLABROUS 2); DNA binding / transcription factor | NA | 0.13 |
| bo6g029470 | Positive branching | TPS6 | ATTPS6; alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase | NA | 1.65 |
| bo6g107020 | " | TUA6; structural constituent of cytoskeleton | NA | 0.63 |
| bo9g022270 | " | PKCBP, KCBP | ZWI (ZWICHEL); calmodulin binding / microtubule motor | NA | 0.57 |
| bra018825 | " | TUA6; structural constituent of cytoskeleton | NA | 0.53 |
| bra016164 | Negative initiation | MYBL2 (ARABIDOPSIS MYB-LIKE 2); DNA binding / transcription factor | NA | 1.56 |
| bo3g149420 | " | UPL3 | KAK (KAKTUS); ubiquitin-protein ligase | chr4:18041031-18049292 REVERSE' | NA | 0.68 |
| bo2g012520 | Negative branching | ATMIXTA | ATMYB16 (MYB DOMAIN PROTEIN 16); DNA binding / transcription factor | NA | 0.36 |
| bo3g010230 | " | ATMIXTA | ATMYB16 (MYB DOMAIN PROTEIN 16); DNA binding / transcription factor | NA | 0.29 |
| bo9g164230 | " | ATMIXTA | ATMYB16 (MYB DOMAIN PROTEIN 16); DNA binding / transcription factor | NA | 0.18 |
| bra024337 | Trichome size | HYS1 | CPR5 (CONSTITUTIVE EXPRESSION OF PR GENES 5) | NA | 1.94 |
| bo2g029050 | " | FLP1, YRE, CER3, WAX2 | CER3 (ECERIFERUM 3); binding / catalytic/ iron ion binding /oxidoreductase | NA | 0.56 |
| bra020412 | " | FLP1, YRE, CER3, WAX2 | CER3 (ECERIFERUM 3); binding / catalytic/ iron ion binding /oxidoreductase | NA | 0.41 |
| bo9g133540 | " | FLP1, YRE, CER3, WAX2 | CER3 (ECERIFERUM 3); binding / catalytic/ iron ion binding /oxidoreductase | NA | 0.20 |
aCotyledon values are arranged from highest expression to lowest expression within each functional category using the K-5-8 line