Table 1.
Motifs found by the GimmeMotifs algorithm underneath HNF1β binding sites.
| ID | Consensus | Database match | P-value |
|---|---|---|---|
| GimmeMotifs_13 | TAAATAAATAAATAAATAAATAAAT | Foxg1_DBD_ATAAACAAGTRTAAACA | 0.98 |
| GimmeMotifs_14 | AwwTAwwTAwwTAwwTAwwTA | POU6F2_DBD_WTAATKAGCTMATTAW | 0.39 |
| GimmeMotifs_15 | TAAATAAATA | Foxc1_DBD_GTAAAYAAACA | P>0.01 |
| GimmeMotifs_16 | TnGTTAATnATTnA | HNF1B_full_NRTTAATNATTAACN | P>0.01 |
| GimmeMotifs_3 | sArGmCAGC | TGIF1_DBD_TGACAGSTGTCA | P>0.01 |
| GimmeMotifs_8 | CCAGrAsAGs | MA0092.1_Hand1::Tcfe2a | 0.08 |
| GimmeMotifs_7 | rGCTACAGwG | Osr2_pwm_primary_SCI09 | P>0.01 |
| GimmeMotifs_17 | TTAATnATTAAy | HNF1A_full_NRTTAATNATTAACN | P>0.01 |
| GimmeMotifs_1 | CyCTsyCyy | Esrra_pwm_secondary_SCI09 | P>0.01 |
| GimmeMotifs_12 | GTCTGAAGAC | BATF3_DBD_TGATGACGTCATCA | 0.05 |
| GimmeMotifs_4 | CAGGCTGGCC | MA0112.2_ESR1 | p>0.01 |
| GimmeMotifs_6 | mTkkAnTnrwAnkkAAnnGAATGGAATGnAnTrkAwwGkwATGGmATr | Zfp410_pwm_primary_SCI09 | 0.18 |
| GimmeMotifs_10 | AGTACACTG | SOX10_full_AACAATRTKCAGWGTT | P>0.01 |
| GimmeMotifs_2 | AGCCCTGGC | Zfp691_pwm_primary_RC_SCI09 | P>0.01 |
| GimmeMotifs_9 | ynrCCAsyAGrkGGCrsyn | MA0139.1_CTCF | 0.0 |
| GimmeMotifs_5 | CCTGGAAC | MA0144.1_Stat3 | P>0.01 |
| GimmeMotifs_11 | CCCCmAAmCAmCCmCmmmC | MA0073.1_RREB1 | 0.0 |
| GimmeMotifs_18 | GGAAGGAAGGAAGGAAGG | MA0149.1_EWSR1-FLI1 | 0.0 |
ID; name assigned to the found motif by the GimmeMotifs algorithm. Consensus; the motif sequence found underneath HNF1β binding sites. Database match; depicts the protein and motif from the JASPAR database that optimally fits with the HNF1β dataset motif. P-value; shows whether the HNF1β dataset consensus significantly matches with the JASPAR database motif.