. Author manuscript; available in PMC: 2018 Apr 17.

Published in final edited form as: DNA Repair (Amst). 2015 Dec 2;37:53–66. doi: 10.1016/j.dnarep.2015.11.005

Table 1.

Oligonucleotides used in this study.

Structure	Substrate	Sequence (5′–3′)
	(a/b)	T1 GGAATTCTACCAGTGCCTTGCTAGGACATCTTTGCCCA
	22/15(fork-1)	B1 CTAGACAGCTCCATGTAGCAAGGCACTGGTAGAATTC
	Blunt end 22 base pairs	T2 GAGTGTGGTGTACATGCACTAC
	Blunt end 22 base pairs	B2 GTAGTGCATGTACACCACACTC
	Blunt end 80 base pairs	T3 GCTGATCAACCCTACATGTGTAGGTAACCCTAACCCTAACCCT
		AAGGACAACCCTAGTGAAGCTTGTAACCCTAGGAGCT
		B3 AGCTCCTAGGGTTACAAGCTTCACTAGGGTTGTCCTTAGGGTT
		AGGGTTAGGGTTACCTACACATGTAGGGTTGATCAGC
	dsDNA 32/53 base pairs	T4 TTATTGTCTCATTAGCGGATACATATTTGAAT
		B4 ATTCAAATATGTATCCGCTAATGAGACAATAACCCTG
		ATAAATGCTTCACTAG
	ssDNA	T5 GAAGCATTTATCAGGGTTATTGTCTCATGAGCGGA
	ssDNA	TACATATTTGAAT
	ssRNA	T6 GAAGCAUUUAUCAGGGUUAUUGUCUCAUGAGCGGA
	ssRNA	UACAUAUUUGAAU