Table 2. KEGG pathways contributing most to the agar-grown phenotype.
| KEGG pathways | Average P1 | SD P1 | Average N1 | SD N1 | Average SR |
|---|---|---|---|---|---|
| Regulation of autophagy | 1.03E-06 | 1.69E-06 | 6.42E-05 | 9.93E-06 | 0.02 |
| Sphingolipid metabolism | 1.81E-06 | 8.73E-07 | 5.20E-05 | 9.24E-06 | 0.03 |
| Folate biosynthesis | 1.47E-06 | 5.76E-07 | 1.80E-05 | 4.61E-06 | 0.08 |
| Ubiquitin mediated proteolysis | 2.96E-06 | 6.95E-07 | 3.11E-05 | 2.71E-06 | 0.10 |
| Arachidonic acid metabolism | 1.17E-05 | 3.77E-06 | 1.15E-04 | 1.75E-05 | 0.10 |
| Basal transcription factors | 1.74E-06 | 9.97E-07 | 1.54E-05 | 2.86E-06 | 0.11 |
| ABC transporters | 4.39E-06 | 1.30E-06 | 3.87E-05 | 7.76E-06 | 0.11 |
| Endocytosis | 4.73E-06 | 1.41E-06 | 2.49E-05 | 3.41E-06 | 0.19 |
| SNARE interactions in vesicular transport | 3.06E-06 | 1.86E-06 | 1.51E-05 | 2.70E-06 | 0.20 |
| Sulfur relay system | 3.96E-06 | 1.37E-06 | 1.95E-05 | 5.01E-06 | 0.20 |
P1: Positive weight of the gene set for constraint 1, N1: Negative weight of the gene set for constraint 1, SR: set ratios (SR = P1/N1) reflecting the contribution of the gene set to the phenotype, SD: standard deviation. See Methods more details about the methodology.