Table 3. KEGG pathways contributing most to the liquid-grown phenotype.
| KEGG pathways | Average P1 | SD P1 | Average N1 | SD N1 | Average SR |
|---|---|---|---|---|---|
| 2-Oxocarboxylic acid metabolism | 9.41E-05 | 9.93E-06 | 1.99E-06 | 3.72E-07 | 47.26 |
| Ribosome | 4.22E-05 | 5.05E-06 | 1.42E-06 | 1.53E-06 | 29.61 |
| Pentose phosphate pathway | 9.72E-05 | 1.19E-05 | 3.52E-06 | 3.43E-06 | 27.59 |
| Biosynthesis of unsaturated fatty acids | 4.31E-05 | 5.89E-06 | 2.04E-06 | 8.55E-07 | 21.12 |
| Phenylalanine, tyrosine and tryptophan biosynthesis | 3.22E-05 | 2.93E-06 | 1.79E-06 | 2.18E-06 | 18.04 |
| Proteasome | 1.04E-05 | 4.81E-06 | 6.10E-07 | 1.01E-06 | 17.00 |
| Oxidative phosphorylation | 5.76E-05 | 5.73E-06 | 5.18E-06 | 5.17E-07 | 11.12 |
| Valine, leucine and isoleucine biosynthesis | 4.04E-05 | 4.18E-06 | 5.11E-06 | 8.26E-07 | 7.89 |
| Ubiquinone and other terpenoid-quinone biosynthesis | 1.41E-05 | 3.57E-06 | 1.94E-06 | 9.05E-07 | 7.31 |
| Carbon fixation in photosynthetic organisms | 7.80E-05 | 9.34E-06 | 1.09E-05 | 2.25E-06 | 7.17 |
P1: Positive weight of the gene set for constraint 1, N1: Negative weight of the gene set for constraint α = 1, SR: set ratios (SR = P1/N1) reflecting the contribution of the gene set to the phenotype, SD: standard deviation. See Methods more details about the methodology.