TABLE 1 .

Viruses detected from house mouse fecal samples by UHTS that were not further characterized by PCR^a

Virus association and name	Family	Genus	Maximum contig (nt)	Most similar viral sequence	Coverage (%)	BLAST identity (%)	E value
Vertebrate associated
Murine adenovirus 2	Adenoviridae	Mastadenovirus	20,169	Murine adenovirus 2	99	95	0.0
Mouse papillomavirus 1	Papillomaviridae	Pipapillomavirus	7,375	Mus musculus papillomavirus 1	100	99	0.0
Murine AAV-1	Parvoviridae	Dependovirus	4,339	Mouse AAV-1	56	91	0.0
Murine AAV-2	Parvoviridae	Dependovirus	4,449	Mouse AAV-1	43	75	0.0
Mouse parvovirus 2	Parvoviridae	Protoparvovirus	4,875	Mouse parvovirus 2	100	99	0.0
Canine parvovirus 2	Parvoviridae	Protoparvovirus	4,899	Canine parvovirus 2a	97	97	0.0
Murine FaGv-1	Genomoviridae	Gemycircularvirus	2,129	Mongoose FaGv	53	81	0.0
Murine FaGv-2	Genomoviridae	Gemycircularvirus	2,418	HCBI9.212 virus	83	77	0.0
Chicken anemia virus	Anelloviridae	Gyrovirus	2,023	Chicken anemia virus	100	98	0.0
Murine circovirus	Circoviridae	Circovirus	909	Porcine-circo-like virus 21	89	38b	5e−57
TMEV	Picornaviridae	Cardiovirus	7,986	Sikhote-Alin virus	99	84	0.0
Murine picobirnavirus 1	Picobirnaviridae	Picobirnavirus	1,011	Picobirnavirus 504	97	75	7e−176
Murine picobirnavirus 2	Picobirnaviridae	Picobirnavirus	1,544	Human picobirnavirus	77	71	9e−145
Murine picobirnavirus 3	Picobirnaviridae	Picobirnavirus	1,602	Wolf picobirnavirus	64	71	4e−124
Insect associated
Fresh Meadows   densovirus 1	Parvoviridae	Densovirus	3,171	Bombyx mori densovirus Zhenjiang	98	34b	1e−151
Fresh Meadows   densovirus 2	Parvoviridae	Densovirus	3,189	Bombyx mori densovirus 3	96	35b	3e−169
Fresh Meadows   densovirus 3	Parvoviridae	Densovirus	3,027	Bombyx mori densovirus Zhenjiang	99	33b	4e−151
Fresh Meadows   densovirus 4	Parvoviridae	Densovirus	3,387	Bombyx mori bidensovirus	91	30b	1e−122
Wuchang cockroach   virus 3	Chuviridae	Unclassified	3,245	Wuchang cockroach virus 3	100	99	0.0
Chelsea phlebo-like   virusc	Bunyaviridae	Phlebovirus	4,408	Arumowot virus	13	25b	0.031
Bloomfield virus	Reoviridae	Unclassified	4,059	Bloomfield virus	98	95	0.0

^aAbbreviations: AAV, adeno-associated virus; FaGv, feces-associated gemycircularvirus; TMEV, Theiler’s murine encephalomyelitis virus. Classification is per ICTV except for Wuchang cockroach virus 3 (59). Plant and fungal viruses, including those taxonomically assigned to Tymovirales, Tombusviridae, Virgaviridae, Partitiviridae, Totiviridae, and Endornaviridae, were not included in the analysis. Contigs less than 500 nt were excluded.

^bAlignment was performed at the amino acid level (BLASTx).

^cPartial genome by Sanger sequencing.