TABLE 2 .

Viruses detected from house mouse fecal samples by UHTS that were further characterized by PCR^a

Virus name	Abbreviation	Family	Genus	Maximum contig (nt)	Most similar viral sequence	Coverage (%)	BLAST identity (%)	E value
Murine-associated porcine bocavirusf	MuAPBV	Parvoviridae	Bocaparvovirus	4,851	Porcine bocavirus 1	99	90	0.0
Murine bocavirusf	MuBV	Parvoviridae	Bocaparvovirus	5,069	Rat bocavirus	46	49d	0.0
Murine chapparvovirusf	MuCPV	Parvoviridae	Chapparvovirusb	4,174	Desmodus rotundus parvovirus	84	70	0.0
Mus musculus polyomavirus 3e	MmusPyV-3	Polyomaviridae	Betapolyomavirus	5,091	Rattus norvegicus polyomavirus 2	87	72	0.0
Lactate dehydrogenase -elevating virus	LaDV	Arteriviridae	Porartevirus	14,052	LaDV	99	88	0.0
Murine hepatitis virus	MHV	Coronaviridae	Betacoronavirus	31,414	MHV	98	94	0.0
Murine astrovirus 1f	MuAst-1	Astroviridae	Mammastrovirus	6,707	Murine astrovirus- STL 2	100	85	0.0
Murine astrovirus 2f	MuAst-2	Astroviridae	Mammastrovirus	6,197	Rat astrovirus	78	77	0.0
Murine norovirus	MNV	Caliciviridae	Norovirus	7,382	Murine norovirus 3	100	91	0.0
Murine sapovirusg	MuSaV	Caliciviridae	Sapovirus	7,169	Porcine sapovirus (OH-JJ681)	83	42d	0.0
Murine picornavirusf	MuPiV	Picornaviridae	Unclassified	7,112	Rabovirus A	97	52d	0.0
Murine kobuvirusf	MuKoV	Picornaviridae	Kobuvirus	8,099	Mouse kobuvirus	99	78	0.0
Murine feces-associated hepe-like virusf	MuFAHLV	Unclassifiedc	Unclassified	7,192	Hubei hepe-like virus	66	37d	0.0
Murine rotavirus	MuRotaV	Reoviridae	Rotavirus	2,426	Murine rotavirus	99	88	0.0
Murine feces-associated rhabdovirusf	MuFARV	Rhabdoviridae	Unclassified	11,849	Vesicular stomatitis New Jersey virus	54	38d	0.0

^aClassification is per ICTV except as noted otherwise. Plant and fungal viruses, including those taxonomically assigned to Tymovirales, Tombusviridae, Virgaviridae, Partitiviridae, Totiviridae, and Endornaviridae, were not included in the analysis. Contigs less than 500 nt were excluded.

^bSee reference 15.

^cMember of a proposed “Hepe-Virga” clade (27).

^dAlignment performed at the amino acid level (BLASTx).

^eFull genome by Sanger sequencing.

^fFull coding regions by Sanger sequencing.

^gNear-full coding region by Sanger sequencing.