TABLE 6 .
Pairwise comparison of bacterial coinfection load between sites
| Site pairwise comparison | Fold change | 95% confidence interval |
P value | |
|---|---|---|---|---|
| Lower limit | Upper limit | |||
| X1 vs M2 | 0.30 | 0.14 | 0.65 | 0.001a |
| X1 vs M3 | 0.40 | 0.19 | 0.85 | 0.01 |
| X1 vs Q1 | 0.38 | 0.19 | 0.78 | 0.01 |
| M2 vs M3 | 1.36 | 0.86 | 2.14 | 0.19 |
| M2 vs Q1 | 1.28 | 0.85 | 1.92 | 0.23 |
| M3 vs Q1 | 0.94 | 0.68 | 1.31 | 0.73 |
a
Statistical significance controlling familywise error rate at 0.05 level. Sites K1, X2, and X3 were excluded as no AMR or bacterial genes were detected in mice from these sites.