A multi-gene phylogeny of Chlorophyllum (Agaricaceae, Basidiomycota): new species, new combination and infrageneric classification

Zai-Wei Ge; Adriaana Jacobs; Else C Vellinga; Phongeun Sysouphanthong; Retha van der Walt; Carmine Lavorato; Yi-Feng An; Zhu L Yang

doi:10.3897/mycokeys.32.23831

. 2018 Mar 20;(32):65–90. doi: 10.3897/mycokeys.32.23831

A multi-gene phylogeny of Chlorophyllum (Agaricaceae, Basidiomycota): new species, new combination and infrageneric classification

Zai-Wei Ge ¹, Adriaana Jacobs ², Else C Vellinga ³, Phongeun Sysouphanthong ⁴, Retha van der Walt ², Carmine Lavorato ⁵, Yi-Feng An ¹, Zhu L Yang ¹

PMCID: PMC5904524 PMID: 29681738

Abstract Abstract

Taxonomic and phylogenetic studies of Chlorophyllum were carried out on the basis of morphological differences and molecular phylogenetic analyses. Based on the phylogeny inferred from the internal transcribed spacer (ITS), the partial large subunit nuclear ribosomal DNA (nrLSU), the second largest subunit of RNA polymerase II (rpb2) and translation elongation factor 1-α (tef1) sequences, six well-supported clades and 17 phylogenetic species are recognised. Within this phylogenetic framework and considering the diagnostic morphological characters, two new species, C. africanum and C. palaeotropicum, are described. In addition, a new infrageneric classification of Chlorophyllum is proposed, in which the genus is divided into six sections. One new combination is also made. This study provides a robust basis for a more detailed investigation of diversity and biogeography of Chlorophyllum.

Keywords: Agaricales, Lepiota, Macrolepiota, multigene phylogeny, new taxa

Introduction

The genus Chlorophyllum Massee, 1898 (Agaricaceae, Agaricales) is typified by Chlorophyllum molybdites (G. Mey.) Massee. This genus currently accommodates ca. 16 species (Kirk et al. 2011) and 30 records can be found in Index Fungorum (http://www.indexfungorum.org/Names/NAMES.ASP). Traditionally, this genus was monotypic, only containing the green-spored species, C. molybdites. Based on similarities in morphology and/or molecular evidence, a few species previously placed in Macrolepiota Singer or Lepiota (Pers.) Gray, were transferred into it (Vellinga 2002). Similarly, Endoptychum agaricoides was also transferred to this genus based on molecular evidence and the proposal to conserve Chlorophyllum (hereafter abbreviated as C.) against Endoptychum was submitted to retain the genus name for the well-known toxic species C. molybdites (Vellinga and De Kok 2002) and accepted (Gams 2005). Members of this genus are characterised by the following unique combination of morphological characters: the pileus covering is hymenidermal, the stipe (if present) is smooth and basidiospores lack a germ pore or have a germ pore caused by a depression in the episporium without a hyaline covering. The basidiospores are white, green, brownish or brown in deposit and the habit varies from agaricoid, secotioid to gasteroid (Crous et al. 2015a; Ge and Yang 2006; Vellinga 2003a; 2004b; Vellinga et al. 2003). Species within this genus are saprotrophic and distributed worldwide, often growing in urban and ruderal habitats, with a preference for tropical and subtropical regions (Vellinga 2004a).

Recently, three species, C. lusitanicum G. Moreno, Mohedano, Manjón, Carlavilla & Altés, C. pseudoglobosum J. Sarkar, A.K. Dutta & Acharya and C. sphaerosporum Z.W. Ge & Zhu L. Yang were described from Spain, India and China, respectively (Crous et al. 2015a; Crous et al. 2015b; Ge and Yang 2006). These studies provided a better understanding of the species diversity within the genus, but are confined to certain specific regions and samples from other poorly explored areas such as Africa have seldom been included. Such studies have been focused on new species descriptions, but an infrageneric classification for the genus is still lacking because infrageneric relationships are poorly known.

Phylogenetic studies have shown that Chlorophyllum is nested within Agaricaceae (Ge and Yang 2017; Vellinga 2004b; Vellinga et al. 2003; Vellinga et al. 2011). However, due to limited taxon sampling and /or use of the ribosomal RNA genes only (ITS and /or nrLSU), limited information on infrageneric relationships could be gleaned. Further sampling of more species and phylogenetic analyses based on protein coding genes are needed to clarify relationships within Chlorophyllum.

Based on investigations of lepiotoid fungi in China, Dominican Republic, Germany, Italy, South Africa, Thailand, United Kingdom and the United States of America, detailed morphological and molecular studies were carried out in this study. The aims were to:

1. elucidate species diversity within Chlorophyllum based on both morphological characters and phylogenetic analysis, describe novel species and provide more information on poorly known species;

2. use a combined multi-gene dataset (ITS, nrLSU, rpb2 and tef1) to provide a robust hypothesis for relationships amongst Chlorophyllum species;

3. examine diagnostic characters for recognised clades and establish an infrageneric classification that best reflects the evolutionary history of the genus.

Materials and methods

Taxon sampling and morphological studies

Fifty-nine collections were newly sampled from China, Dominican Republic, Germany, Italy, South Africa, Thailand, the United Kingdom and United States of America and deposited in HMAS, PREM, HKAS (Herbarium of Cryptogams, Kunming Institute of Botany, Chinese Academy of Sciences) and MFLU. Twelve out of the 16 recognised species, plus two recently described species, as well as two putative new species and a new combination were represented in this study. Morphological characters were studied from field notes, colour images of the material and complemented with literature data. Colour names and codes are from Kornerup and Wanscher (1978). Microscopic character observations were conducted under a light microscope using thin handmade sections rehydrated in 5% aqueous potassium hydroxide (KOH) (w/v). Melzer’s reagent was used to test the amyloidity of basidiospores and cresyl blue was used to study the metachromatic reaction (Largent et al. 1977). In the descriptions of basidiospores, the abbreviation [n/m/p] indicates n basidiospores measured from m basidiocarps of p collections; (a)b–c(d) stands for the dimensions of the basidiospores, with b–c containing a minimum of 90 % of the measured values and (a) and (d) extreme values. Q is used to mean “length/width ratio” of a basidiospore and Qav represents average of Q of all basidiospores studied.

DNA extraction, primers, PCR and sequencing

A small piece of dried basidiocarp was excised from a specimen and ground in an Eppendorf tube. Genomic DNA was isolated using the CTAB method (Doyle and Doyle 1987). Optimal dilutions of the DNAs were used to amplify the following regions: internal transcribed spacer (ITS), the large subunit nuclear ribosomal DNA (nrLSU), the second largest subunit of RNA polymerase II (rpb2) and the translation elongation factor 1-α gene (tef1). PCR amplifications used the previously described primers: ITS1F/ITS4 for ITS, LR0R/LR5 for nrLSU (Gardes and Bruns 1993; White et al. 1990), bRPB2-6F /bRPB2-7.1R for rpb2 (Matheny 2005) and 983F/1567R for tef1 (Rehner and Buckley 2005). PCR conditions were as recommended by the Taq polymerase manufacturer (Bioteke, Beijing, China), using an ABI 2720 Thermal Cycler (Applied Biosystems, Foster City, CA, USA). PCR products were cleaned and sequenced by Sangon Biotech (Shanghai) Co. Ltd. (Shanghai, China) and Kunming Shuoqing Biotech Ltd (Kunming, China).

Phylogenetic analyses

In this study, 144 sequences were produced using standard methods and deposited in GenBank (MG741961–MG742106), viz., 59 ITS, 29 nrLSU, 28 rpb2 and 28 tef1 (Figure 1 and Table 1) sequences. To obtain an estimate of Chlorophyllum genetic diversity, 96 ITS sequences were also retrieved from GenBank and included in the phylogenetic analyses (GenBank nos. included in Figure 1).

Figure 1. — ML tree inferred from ITS data. Bootstrap values >50 % are indicated at internodes. Names of new taxa are in bold.

Table 1.

Taxa, vouchers, geographic origin, and GenBank accession numbers of DNA sequences of Chlorophyllum and outgroups used in this study. New sequences generated by this work are in bold.

Taxon	Collection	Origin	nrITS	nrLSU	rpb2	tef1
Chlorophyllum africanum	PREM 62140	South Africa	MG741961	MG742041	MG742070	MG742098
C. africanum	PREM 62141	South Africa	MG741963	MG742042	MG742071	MG742099
C. agaricoides	HKAS 101312	Russia	MG742003	MG742020	MG742050	MG742078
C. agaricoides	HMAS 71678	China: Neimenggu	MG742004	MG742021	MG742051	MG742079
C. arizonicum	AH31724	Mexico	KR233490	KR233499	N/A	N/A
C. arizonicum	Trappe 11481 (AZ80)	USA	HQ020416	HQ020419	N/A	N/A
C. brunneum	HKAS 101315	Italy	MG742013	MG742022	MG742052	MG742080
C. brunneum			AY083206	AF482886	HM488804	HM488886
C. demangei	Z. W. Ge 3112	China: Yunnan	MG741965	MG742027	MG742056	MG742084
C. demangei	Z. W. Ge 3574	China: Yunnan	MG741964	MG742025	MG742055	MG742083
C. globosum	Z. W. Ge 2006-1	China: Yunnan	MG741995	MG742023	N/A	N/A
C. globosum	PREM 62147	South Africa	MG742002	MG742024	MG742053	MG742081
C. hortense	HKAS 101317	China: Hainan	MG741967	MG742026	MG742054	MG742082
C. hortense	Z. W. Ge 3115	China: Yunnan	MG741968	MG742028	MG742057	MG742085
C. hortense	HKAS 90470	China: Yunnan	MG741971	MG742029	MG742058	MG742086
C. lusitanicum	AH45540	Spain	KR233482	KR233491	N/A	N/A
C. lusitanicum	AH43927	Spain	KR233483	KR233492	N/A	N/A
C. molybdites	HKAS 45051	China: Hunan	MG741985	MG742030	MG742059	MG742087
C. molybdites	Z. W. Ge 3381	USA: Florida	MG741993	MG742034	MG742063	MG742091
C. molybdites	Z. W. Ge 3146	China: Yunnan	MG741987	MG742031	MG742060	MG742088
C. molybdites	HKAS 101322	Italy	MG741988	MG742032	MG742061	MG742089
C. molybdites	Z. W. Ge 3377	USA: Florida	MG741992	MG742033	MG742062	MG742090
C. neomastoideum	HKAS 83208	China: Zhejiang	MG741976	MG742035	MG742064	MG742092
C. olivieri	HKAS 31587	Germany: Marburg	MG742016	MG742036	MG742065	MG742093
C. olivieri	HKAS 53466	Germany: Marburg	MG742017	MG742037	MG742066	MG742094
C. palaeotropicum	PREM 62142	South Africa	MG741978	MG742038	MG742067	MG742095
C. palaeotropicum	PREM 62145	South Africa	MG741982	MG742039	MG742068	MG742096
C. palaeotropicum	HKAS 93747	Benin: Okpara	MG741983	MG742040	MG742069	MG742097
C. pseudoglobosum	AM155	India: West Bengal	KP642506	KR080484	N/A	N/A
C. rhacodes			AF482849	AY176345	N/A	HM488885
C. rhacodes			U85312	U85277	HM488803	KC884736
C. sphaerosporum	HMAS 66153	China: Neimenggu	MG742011	MG742043	MG742072	MG742100
C. sphaerosporum	HMAS 71683	China: Neimenggu	MG742012	MG742044	MG742073	MG742101
C. subrhacodes	Z. W. Ge 3411	USA: Florida	MG741975	MG742045	MG742074	MG742102
C. subrhacodes	Z. W. Ge 3232	USA: Florida	MG741973	MG742046	MG742075	MG742103
C. subrhacodes	Z. W. Ge 3385	USA: Florida	MG741972	MG742048	MG742077	MG742105
C. subrhacodes	Z. W. Ge 3242	USA: Florida	MG741974	MG742047	MG742076	MG742104
Outgroups
Agaricus campestris			KM657927	KR006607	KT951556	KR006636
Clarkeinda trachodes			HM488751	KY418837	HM488802	N/A
Coniolepiota spongodes	png012	Thailand	HM488756	HM488774	HM488796	HM488883
Eriocybe chionea			HM488753	HM488772	HM488800	N/A
Heinemannomyces splendidissimus			HM488760	HM488769	HM488793	KT951657
Pseudolepiota zangmui	Z. W. Ge 2175	China: Yunnan	KY768928	MG742049	KY768929	MG742106

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The ITS data set included 155 Chlorophyllum sequences. From these, a subset of 29 collections was chosen to represent the full range of phylogenetic diversity sampled for a four-locus dataset comprising portions of the ITS, nrLSU, rpb2 and tef1 (Table 1). To test the monophyly of Chlorophyllum within Agaricaceae, ML analysis of the rpb2 dataset, which has much fewer ambiguous aligned sections in the matrix compared to the ITS dataset, was conducted with representative genera of the Agaricaceae (Ge and Yang 2017; Ge et al. 2015; Vellinga et al. 2011). As Chlorophyllum is confirmed as a monophyletic group close to Agaricus L. and allied genera in the present study (Suppl. material 1) and recent studies (Ge and Yang 2017; Ge et al. 2015; Vellinga et al. 2011), representative species of these genera were included as outgroups for rooting purposes for analyses; these are Agaricus campestris L., Clarkeinda trachodes (Berk.) Singer, Coniolepiota spongodes (Berk. & Broome) Vellinga, Eriocybe chionea Vellinga, Heinemannomyces splendidissimus Watling and Pseudolepiota zangmui Z.W. Ge.

Sequences were aligned using MAFFT 6.8 (Katoh et al. 2009) and further optimised visually. The best-fit evolutionary model for each dataset was determined using MRMODELTEST (Nylander 2004). Maximum Likelihood (ML) analyses were conducted in RAxML 7.2.6-WIN with default settings using a GTRGAMMA model (Stamatakis et al. 2007). Clade robustness was assessed using a bootstrap analysis with 1000 replicates (Felsenstein 1985).

The ITS-nrLSU, rpb2 and tef1 datasets were analysed separately before concatenation. As no significant (bootstrap support above 70 %) incongruence was detected, the resulting three alignments (ITS-nrLSU, rpb2 and tef1) were combined for further multigene analyses. Unavailable sequences of loci from a few species were treated as missing data in the phylogenetic analyses. Final alignments have been deposited in TREEBASE (http://www.treebase.org) with accession number (S22068).

Results

The ITS alignment contained 787 sites, all of which were included in the analyses. The ML tree is shown in Figure 1 with the final ML optimisation likelihood at -5625.939348. According to the ML tree, 17 phylogenetic species were recovered. The new species were nested within Ellipsoidospororum clade (C. africanum) and Chlorophyllum clade (C. palaeotropicum).

The combined data set included subsamples of the 17 species recovered in the ITS tree. This alignment contained 2896 nucleotide sites (including gaps), consisting of 785, 851, 699 and 561 sites (including gaps) for ITS, nrLSU, rpb2 and tef1, respectively. The analyses identified six distinct well-supported clades within Chlorophyllum, each representing one to four species (Figure 2). These clades are: Chlorophyllum clade, Ellipsoidospororum clade, Endoptychorum clade, Rhacodium clade, Parvispororum clade and Sphaerospororum clade. Each of these clades received 100 percent maximum boot strap (ML-BP) support in the combined data set and strong support (≥87 % boot strap support) in the individual data sets (ITS-nrLSU, rpb2 and tef1 respectively). Species relationships within these six clades are largely resolved, but relationships amongst all clades were not resolved with confidence.

Figure 2. — ML tree inferred from the combined alignment based on ITS, nrLSU, *rpb2* and *tef1*. Bootstrap values >50 % are indicated at internodes. Names of new taxa are shown in bold.

This section contains C. nothorhacodes, C. brunneum, C. rhacodes, C. olivieri and C. venenatum (Bon) C. Lange & Vellinga. There was controversy over the spelling of the species epithet ‘rhacodes’ (originally published as ‘rachodes’). The Nomenclature Committee for Fungi debated the issue for years and the General Committee made the final decision that the epithet of Agaricus rhacodes Vittad. (Descr. Fung. Mang.: 158. 1833) is to be so spelled, even though it was originally spelled ‘rachodes’, which was approved by the International Botanical Congress in Shenzhen, China (Wilson 2017).

Chlorophyllum sect. Sphaerospororum

Z.W. Ge sect. nov.

823860

Diagnosis.

Differs from other sections by the nonporous, globose to subglobose basidiospores and gasteroid basidiocarps or globose to subglobose basidiospores and a hymenodermal pileipellis made up of loosely arranged clavate to broadly clavate elements when the basidiocarps are agaricoid.

Type.

Chlorophyllum sphaerosporum Z.W. Ge & Zhu L. Yang, Mycotaxon 96: 187. 2006.

Description.

Basidiocarps agaricoid or gasteroid, covered with inconspicuous squamules. Basidiospores subglobose to globose without germ pore (with rounded apex). Cheilocystidia (if present) clavate to broadly clavate. Pileipellis a hymeniderm made up of loosely arranged clavate to broadly clavate elements.

Discussion.

This section contains the agaricoid C. sphaerosporum and two hypogeous taxa, C. arizonicum and C. lusitanicum. It is so far the only clade containing gasteroid species.

Recognition of two new species and the transfer of Lepiota demangei from Lepiota to Chlorophyllum

Chlorophyllum africanum

Z.W. Ge & A. Jacobs, sp. nov .

823861

Figs 3A , 4

Figure 3. — Basidiocarps of representative species of *Chlorophyllum*. A *Chlorophyllum* *africanum* (PREM 62141) B *Chlorophyllum* *demangei* (HKAS 89157) C *Chlorophyllum* *globosum* (PREM 62152) D *Chlorophyllum* *palaeotropicum* (HKAS 60195).

Figure 4. — Micro-morphological features of C. *africanum* (PREM 62143, type). A Basidiospores B Basidia C Cheilocystidia D Elements of squamules on pileus. Scale bars: 10 μm (**A, D**); 20 μm (**B, C**).

Diagnosis.

This species is distinguished from other Chlorophyllum species by relatively small basidiocarps with yellow grey to grey orange (5B4) furfuraceous squamules, the squamules composed of a hymenidermal layer made up of greyish-yellow to dull yellow, narrowly clavate to clavate elements, the hyaline ellipsoid basidiospores without a germ pore and the hyaline, cylindric to slightly fusiform cheilocystidia.

Type.

SOUTH AFRICA. 2229 BB Beit Bridge, Farm Matolege 133 MS (−22°14.91'S, 29°47.29'E), alt. ca. 560 m, growing in disturbed area with large volume of animal droppings, 9 February 2014, Van Der Walt, R 885 (holotype: PREM 62143!; isotype: HKAS!). ITS barcoding sequence: MG741962.

Description.

Pileus 30–50 mm broad, hemispherical to convex when young, expanding to broadly convex or applanate with age, sometimes with a prominent umbo; margin sulcate striate; surface covered with thin, yellow grey (4B2–4B3), orange grey (6B2) to grey orange (5B4) furfuraceous squamules, these remaining intact on the disc but elsewhere diffracted-scaly with expansion and receding from pileus margin. Lamellae free and remote from stipe, white to off white, crowded, narrow, up to 6 mm deep, with 1–2 series of lamellulae; edges entire, white. Stipe 35–60 × 3–6 mm, subcylindric, slightly enlarged at base, glabrous, white to light brown, hollow, nearly stuffed, with a simple annulus about 10–15 mm from top of the stipe. Context white, 1–2 mm thick in pileus, discolouring brown to red where bruised or handled, with strong mushroom odour, taste mild. Spore print white to cream.

Basidiospores [100,5,2] (7.5)8.0–9.0 × (5.5) 6.0–6.5(7.0) μm (mean 8.2 ± 0.4 × 6.2 ± 0.3 μm), Q = (1.2)1.3–1.4 (1.5), Qav = 1.3 ± 0.05, ellipsoid, occasionally ovoid in side view or in frontal view, with rounded apex, smooth, hyaline, congophilous, dextrinoid, with one guttule in most cases, without germ pore, slightly thick walled, becoming purplish-red (14A6–14A7) in cresyl blue. Basidia 29–33 × 10.0–11.0 µm, clavate, hyaline, 4-spored, rarely 2-spored. Cheilocystidia 28–50 × 6.0–10.0 µm, cylindric to slightly fusiform, hyaline. Pleurocystidia not observed. Lamella trama regular to slightly interwoven, made up of subcylindrical hyaline hyphae, 7.0–12.0 μm diam. Pileipellis a hymenidermal layer made up of greyish-yellow (1B4, 2B3) to dull yellow (3B3), clavate elements of 21–50 × 9.0–14.0(16.0) µm, slightly thick walled, with greyish-yellow vacuolar pigments; wall greyish-yellow; terminal elements mostly narrowly clavate. Clamp connections not observed.

Distribution.

So far, only known from South Africa.

Ecology.

Saprotrophic, solitary to scattered, terrestrial.

Etymologyл

(L.) in reference to Africa where it is collected.

Additional specimens examined.

SOUTH AFRICA. 2229 BB Beit Bridge, Farm Matolege 133MS, −22°14.66'S, 29°46.75'E, 574 m, on soil. 10 January 2014, Van Der Walt, R787 (PREM 62140). 2229 BD Kamkusi, Farm Ludwigslust 163 MS (Farm Yard), −22°16.64'S, 29°48.22'E, alt. ca. 610 m, 9 March 2014, Van Der Walt, R935 (PREM 62141). Scattered in sandy soil of semi-shade to full sun, cleared area.

Discussion.

Chlorophyllum africanum is morphologically very similar to C. bharatense Sathe & S.M. Kulk. Both species have a small-sized convex to applanate pileus covered with pale olivaceous brown squamules, clavate cheilocystidia and broadly ellipsoid basidiospores. However, C. bharatense differs from C. africanum by the umbonate pileus, lamellae that become reddish- brown on drying, basidiospores with an indistinct or absent germpore and squamules composed of a trichodermal layer (Sathe et al. 1981 (‘1980’)).

Chlorophyllum africanum is also similar to C. hortense on account of the small-sized basidiocarps, ellipsoid basidiospores and subcylindrical cheilocystidia. However, C. hortense differs from C. africanum by 2-spored basidia and the whitish context of the stipe becoming reddish where bruised (Akers and Sundberg 1997; Vellinga 2003b).

Chlorophyllum demangei (see below) is characterised by the frequent and obviously umbonate pileus and large basidiospores measuring (7.5) 8.0–10.5 (12.5) × (5.0) 5.5–7.0 (7.5) µm. Molecular phylogenetic results clearly support the recognition of the two as separate species.

Leucocoprinus zeylanicus (Berk.) Boedijn, described from Sri Lanka, is also similar to C. africanum due to the small-sized pileus with a distinct umbo, the subcylindric cheilocystidia and the short ellipsoid basidiospores (Pegler 1986). However, the finely radially silky-striate pileus of Lc. zeylanicus beset with sparse, minute, blackish-brown repent squamules and the basidiospores with a small germ pore (Pegler 1986), differentiate this species from C. africanum.

Lepiota zeyheri (Berk.) Sacc., a species also found in South Africa, is somewhat similar to C. africanum on account of the whitish pileus with a clay brown umbo that is elsewhere covered with cream or brown squamules and the ellipsoid basidiospores. However, L. zeyheri has much larger basidiocarps measuring 10–22 cm or larger, a pale pink spore deposit, larger broadly ellipsoid basidiospores (15.0–17.0 × 10.0–12.0 µm) with a germ pore and clavate cheilocystidia (Pearson 1950).

Chlorophyllum palaeotropicum

Z.W. Ge & A. Jacobs sp. nov.

823862

Figs 3D , 5

Figure 5. — Micro-morphological features of C. *palaeotropicum* (PREM 62142, type). A Basidiospores B Basidia C Cheilocystidia D Elements of squamules on pileus. Scale bars: 10 μm (**A, D**); 20 μm (**B, C**).

Diagnosis.

This species is distinguished from other Chlorophyllum species by medium-sized basidiocarps with distinct brownish squamules composed of a trichodermal layer of subcylindrical brownish hyphae and slightly enlarged terminal elements, the greenish subglobose basidiospores without a germ pore and the clavate to narrowly clavate cheilocystidia with brownish to fuscous brown vacuolar pigments.

Type.

SOUTH AFRICA. 2229 BD Kamkusi, Farm Ludwigslust 163MS (−22°15.39'S, 29°47.48'E), alt. 582 m, near open area along dirt road, growing in loam soil, compost-rich – mopane (Colophospermum mopane) leaf layer, 30 November 2013, Van Der Walt, R 715 (Holotype: PREM 62142!; isotype: HKAS!). ITS barcoding sequence: MG741978.

Description.

Pileus 50–100 mm broad, hemispherical to convex at first, expanding to convex to broadly convex with age; surface covered with fibrillose, tufted, reddish-white (7A2) to brownish-orange (6C3) squamules at the margin and brownish-grey (6C2), orange grey (6B2), to greyish-brown (7D3) plate-like squamules at the centre. Lamellae free and remote from stipe; white to off-white when young, whitish to greenish-white (26A2) when mature, crowded, 6–11 mm deep, with 1–2 series of lamellulae. Stipe 16–90 × 3.5–8 mm, subcylindrical, with slightly enlarged base, straight or curved, white; hollow, nearly stuffed, with an annulus at the middle part of the stipe. Context white, 4–6 mm thick in pileus, white in pileus and stipe, discolouring pastel pink (7A4) when drying, with a distinct mushroom smell, taste mild. Spore print greyish-green (30B3–30B4).

Basidiospores [100,5,3] (8.0)8.5–11.0(12.0) × (6.0)7.0–9.0(10.0) μm (mean 9.8 ± 0.9 × 8.0 ± 0.8 μm), Q = 1.0–1.4, Qav = 1.2 ± 0.05, ellipsoid, oblong in side view or in frontal view, with rounded apex, smooth, hyaline when young, greenish-white (27A2), olive to brownish (in KOH) when mature, congophilous, dextrinoid, without germ pore, slightly thick-walled; mature basidiospores staining purplish-red (14A6–14A7) in cresyl blue; immature basidiospores staining bluish-violet (18B7) in cresyl blue. Basidia 29–33 × 10.0–12.0(15.0) µm, clavate, hyaline, 4-spored. Cheilocystidia (13)20–55(63) × 10.0–15.0(20.0) µm, clavate, rarely broadly clavate or narrowly clavate, brownish to fuscous brown, sometimes septate. Pleurocystidia absent. Lamella trama slightly interwoven, made up of subcylindrical hyaline hyphae, 8–14 μm diam. Pileipellis a trichoderm made up of filamentous or cylindrical hyphae, slightly interwoven, interspersed with brown to tea brown hyphae, 8–14 µm in diam., thick-walled, with brownish vacuolar pigments; wall brownish-yellow; terminal elements mostly slightly enlarged to narrowly clavate, rarely cylindrical. Clamp connections present on basal septa of young basidia and tissue of annulus, but not common.

Distribution.

Known from Benin and South Africa in Africa and from China in Asia.

Ecology.

Saprotrophic, solitary to scattered, terrestrial.

Etymology.

(L.) with reference to distribution of this species in the Old World tropics.

Additional specimens examined.

BENIN. Okpara: countryside of North-eastern Parakou, 15 km from Parakou, alt. ca 330 m, 18 June, 2015, G. Wu 1370 (HKAS 93747). CHINA. Hainan Province: Sanya, Yalongwan, on man-made lawn near seaside, 29 June 2010, Z.W. Ge 2519 (HKAS 60195). SOUTH AFRICA. 2229 BB Beit Bridge, Farm Wimpsh 139 MS, 12 February 2014, Van Der Walt, R891 (PREM 62144), growing in cleared area, near water hole, among Bulbostylis hispidula; 2229 BD Kamkusi, Farm Ludwigslust 163 MS (farm yard), −22°16.64'S, 29°48.22'E, alt. 606 m, growing in loam soil in cleared area, in semi-shade to full sun, 9 March 2014, Van Der Walt, R 938 (PREM 62145); 2229 BD Kamkusi, Farm Ludwigslust 163MS (−22°16.64'S, 29°48.22'E), alt. ca. 610 m, growing in loam soil in cleared area, 14 February 2014, Van Der Walt, R 905 (PREM 62146).

Discussion.

Chlorophyllum palaeotropicum is very similar morphologically to C. shimogaense Sathe & S.M. Kulk. Both species have medium-sized, hemispherical to convex pilei covered with reddish-white to brownish-orange squamules composed of a trichodermal layer. Both species also possess clavate cheilocystidia and subglobose basidiospores. However, C. shimogaense possesses an umbonate pileus, basidiospores with an indistinct or absent germ pore, much smaller basidia (13–24 × 6–8.5 μm) and no clamp connections (Sathe et al. 1981 (‘1980’)).

Chlorophyllum palaeotropicum is also similar to C. molybdites, C. globosum and C. pseudoglobosum in general appearance due to the brownish to reddish discolourations where bruised, but C. palaeotropicum differs from these three species in having subglobose to globose basidiospores without a germ pore (apex rounded), while C. molybdites, C. globosum and C. pseudoglobosum have amygdaliform basidiospores with large germ pores (apex truncate).

Chlorophyllum palaeotropicum also resembles C. sphaerosporum on account of the basidiocarps bearing similar subglobose basidiospores without a germ pore. However, the squamules of C. sphaerosporum are made up of a hymenidermal layer composed of clavate to broadly clavate terminal elements. Furthermore, the context of C. sphaerosporum does not change colour when bruised. So far, C. sphaerosporum has only been recorded from temperate regions in northern China. These two species also belong to two different sections (Figure 1).

Chlorophyllum palaeotropicum is somewhat similar to L. zeyheri on account of the overall appearance, the broadly ellipsoid basidiospores and clavate cheilocystidia. However, L. zeyheri has much larger basidiocarps measuring 10–22 cm or larger and pale pink spore prints (Pearson 1950). Furthermore, L. zeyheri has larger basidiospores (15.0–17.0 × 10.0–12.0 µm) with a germ pore (Pearson 1950).

Chlorophyllum demangei

(Pat.) Z.W. Ge & Zhu L. Yang comb. nov.

823863

Basionym.

Lepiota demangei Pat., Bull. trimest. Soc. mycol. Fr. 23(2): 78. 1907.

Type.

VIETNAM. Hanoi: Tonkin, M. Demange 236 (Herb. Patouillard, FH 4244–holotype!).

Description.

Pileus small to medium-sized, 2.5–8.5 cm in diam. (Figure 3B), umbonate, white to cream coloured, covered with concentrically arranged, ochraceous to yellowish-brown squamules; margin finely striate. Lamellae free, white to cream-coloured, 5–7 mm in height. Stipe 5–6 × 0.2–0.5 cm, whitish, becoming yellowish to brownish on bruising, slender, annulus 1–1.5 cm below apex of the stipe, persistent. Context of pileus and stipe white, becoming reddish, pinkish or orange red when cut, thin in pileus. Spore print white.

Basidiospores [45/2/1] (7.5) 8.0–10.0 (12.5) × (5.0) 5.5–7.0 (7.5) μm, 8.7 ± 0.4 × 6.3 ± 0.3 μm, Q= (1.3)1.4–1.7 (1.8), Qav =1.5 ± 0.09; ellipsoid, hyaline, strongly dextrinoid, slightly thick-walled, apex lacking germ pore but somewhat thinner than other areas. Basidia 25–30 × 7–9 μm, clavate, 4-spored. Squamules on pileus (pileus disc of the smaller slice of the holotype) composed of clavate to narrowly clavate cells, 45–66 × 11–15 μm, hyaline to very pale brownish in KOH. Clamp connections not observed.

Distribution.

Known from China and Vietnam in Asia.

Ecology.

Saprotrophic, solitary to scattered, terrestrial.

Additional specimens examined.

CHINA. Yunnan Province: Xishuanbangna Prefecture, Mengla County, Mengyuan, alt. ca. 770 m, July 2, 2014, Z.W. Ge 3574 (HKAS 84412); same locality, K. Zhao 494 (HKAS 89157); Honghe Prefecture, Gejiu City, Manghao town, September 25, 2011, Z.W. Ge 3112 (HKAS 70616).

Discussion.

The distinctive characters of Chlorophyllum demangei are the discolouration of basidiocarps when bruised, the ellipsoid basidiospores without a germ pore and the pileal squamules composed of clavate to narrowly clavate elements. From the examination of specimens newly collected from southern Yunnan in China, not far away from the locality where the type of Lepiota demangei was collected, the distinctive characters were found that fit the description of Lepiota demangei (Yang 2000) very well. Thus, Lepiota demangei is transferred from Lepiota to Chlorophyllum.

Chlorophyllum globosum

(Mossebo) Vellinga

Type.

CAMEROON. Yaoundé, alt. 780 m, growing on humus in shade under tree, 1 November, 1996, D. C. Mossebo, D. C. Mossebo 98-1 kept in the Herbarium of University of Yaoundé I (non vide).

Description.

Basidiocarps medium to large-sized (Figure 3C). Pileus 5.0–20.0 cm broad, ovoid to subglobose when young, expanding to parabolic, convex to broadly convex with age; margin inflexed, with short, fine striations; surface covered with yellowish-white (3A2) to yellowish-grey (4A2), greyish-yellow (4B3–4B4), brownish-orange (6C6) to greyish-brown (5D3) squamules. The squamules remain intact at disc, but elsewhere diffract with expansion and recede from pileus margin, displaying the white to yellowish-white (2A2, 3A2, 4A2) felted or fibrillose background which turned pastel red to red (9A4–6) when touched. Lamellae free and remote from stipe with obvious gutter, white to orange-white (5A1–2) when young, turning pastel red to red (9A4–6) when touched, pastel green to greyish-green (29A4, 29B4) when fully mature, crowded, ventricose and narrow near pileal margin, crowded, up to 8 mm wide, with 1–2 series of lamellulae; edge finely fimbriate, white to yellowish-grey (4A2). Stipe 8.5–28.0 × 1.0–3.1 cm, subcylindric, tapering to apex, with bulb-like, 3.0–3.4 cm wide; glabrous, white to brownish-orange (6C3–6), hollow, nearly stuffed, with an annulus about 1/3 away from the stipe apex (Figure 3C); sometimes with distant white fibrillose at apex zone, turning pastel red to red (9A4–6) when touched, with white rhizomorph connected to substrate. Context thick, white in pileus and stipe, brownish-orange (6C3–6) at apex zone, paler to middle zone and white downward base, discolouring pastel red to red (9A4–6) in both pileus and stipe context when bruised, with mushroom odour. Taste mild. Spore print yellowish-white (2A2) to pale yellow (2A3) to greyish-green (29D3–5, 29D5–6).

Basidiospores [40,2,2] (10.5)11.5–12.0 (12.5) × (8.0) 8.5–9.0 μm (mean 11.8 ± 0.4 × 8.7 ± 0.3 μm), Q = 1.3–1.4 (1.5), Qav = 1.4 ± 0.05, broadly amygdaliform in side view, ovoid in frontal view, with truncate apex, smooth, greenish-white (28A2), congophilous, dextrinoid, thick-walled (Figure 6A), becoming purplish-red (14A6–14A7) in cresyl blue. Basidia 29–38 × 12.0–14.0 µm, clavate, hyaline, 4-spored, sometimes 2-spored, rarely 1-spored. Cheilocystidia 42–65 × (15.0)18.0–29.0 µm, clavate occasionally with slightly long stalk, hyaline, sometimes with greyish-yellow vacuolar pigments. Pleurocystidia absent. Pileipellis a hymenidermal layer made up of subcylindrical hyphae (5.0–11.0 µm in diam.), slightly thick walled, with dull yellow (3B3) vacuolar pigments; terminal elements with rounded or attenuate apex, mostly narrowly clavate. Clamp connections not observed.

Figure 6. — Micro-morphological features of C. *globosum* (HKAS 52741). A Basidiospores B Basidia C Cheilocystidia D Elements of squamules on pileus. Scale bars: 10 μm (**A, D**); 20 μm (**B, C**).

Distribution.

Known from Cameroon, Nigeria and South Africa in Africa and from China, India and Thailand in Asia.

Ecology.

Saprotrophic, solitary to scattered, terrestrial.

Specimens examined.

CHINA. Yunnan Province: between Yuanmou and Yongren, 28 June 2006, Z.W. Ge 2006-1 (HKAS 52741). SOUTH AFRICA. 2229 BD Kamkusi, Farm Ludwigslust 163 MS, −22°16.27'S, 29°49.02'E, alt. ca. 580 m, 12 March 2014, Van Der Walt, R 957 (PREM 62147), growing in sandy soil under Sickle bush (Dichrostachys cinerea) and Umbrella thorn trees (Vachellia tortilis, formerly Acacia tortilis); 2229 BD Kamkusi, Farm Ludwigslust 163 MS, alt. 584m, growing in sandy soil under Sickle bush and Umbrella thorn trees, 7 February 2014, Van Der Walt, R 869 (PREM 62148); same locality, 9 March 2014, Van Der Walt, R 936 (PREM 62149); 2229 BB Beit Bridge, Farm Matolege 133 MS, alt. ca. 580m, shady area under blue thorn (Senegalia erubescens, formerly Acacia erubescens), compost-rich, adjacent to lawn in hunting camp, 12 February 2014, Van Der Walt, R 892 (PREM 62150); 2229 BB Beit Bridge, Farm Wimpsh 139 MS, alt. ca. 604 m, loam soil, amongst grass – adjacent to seasonally waterlogged pan, 12 January 2014, Van Der Walt, R 821 (PREM 62151); same locality, 14 February 2014, Van Der Walt, R 900 (PREM 62152). THAILAND. Chiang Mai Province: Mae Taeng District, Pongduad Village, 16°06'N, 99°43'E, 780–810 m, 16 June 2010, P. Sysouphanthong, P37 (MFLU100555); Chiang Rai Province: Muang District, Ratjabhat University campus, 30 August 2012, P. Sysouphanthong, 2012-21 (MFLU121815).

Discussion.

Chlorophyllum globosum was originally described from Cameroon in the genus Macrolepiota. It was said to differ from Macrolepiota odorata “by the globose pileus and the ochraceous spore print” (Mossebo et al. 2000). In fact, the pileus does not stay globose during maturation but becomes broadly convex (Figure 3C). Based on the morphological characters such as the truncate basidiospores and its phylogenetic position, Vellinga (2002) transferred it to Chlorophyllum. The authors’ molecular phylogeny confirms that C. globosum nests in Chlorophyllum close to C. molybdites, but it differs from the latter in having a pale yellow spore print and clavate cheilocystidia. This species was first described from Africa, but its presence in several Asian countries is confirmed.

Key to the 17 species of Chlorophyllum included in the present study

1	Basidiocarps sequestrate (either secotioid or gasteroid), basidiospores statismosporic	2
–	Basidiocarps agaricoid, basidiospores ballistosporic	4
2	Basidiocarps secotioid, the margin of the pileus does not break free from the stipe, hymenophore (gleba) labyrinthiform to sub-lamellate	C. agaricoides
–	Basidiocarps gasteroid, stipe absent or rudimentary with a thick whitish mycelial cord, gleba crossed by a columella and capillitium	3
3	Columella not fully developed; basidiospores 7–12 µm in diam	C. arizonicum
–	Columella well-developed, reaching halfway up the basidiocarp; basidiospores 10–14(–15) × 10–13(–14) µm	C. lusitanicum
4	Basidiocarps overall white; basidiospores without germ pore, with rounded apex	5
–	Basidiocarps with distinct dark brown patches and squamules; basidiospores with germ pore; apex truncated	9
5	Basidiospores subglobose to globose; cheilocystidia clavate to broadly clavate	6
–	Basidiospores ellipsoid; cheilocystidia subcylindric to slightly fusiform	7
6	Spore print greyish-green, known from the palaeotropical regions	C. palaeotropicum
–	Spore print white, known from temperate region in Northern China	C. sphaerosporum
7	Basidia 2-spored; widely distributed in Africa, America and Asia	C. hortense
–	Basidia 4-spored; known from palaeotropics	8
8	Pileus with obvious umbo, basidiospores measuring (7.5) 8.0–10.5 (12.5) × (5.0) 5.5–7.0 (7.5), known from Southeast Asia	C. demangei
–	Pileus without obvious umbo, basidiospores (7.5) 8.0–9.0 × (5.5) 6.0–6.5(7.0) μm), known from South Africa	C. africanum
9	Basidiospores less than 10 µm long; terminal elements of pileipellis cylindrical, basidiocarps grown in bamboo forest in east Asia or under oaks of Florida in south-eastern U.S.A	10
–	Basidiospores longer than 10 µm; terminal elements of pileipellis clavate to narrowly clavate; basidiocarps in various habitats (meadows, pastures, lawns, greenhouse, natural forests)	11
10	Cheilocystidia clavate, without apical excrescences; clamp connections present at base of basidia and cheilocystidia; distributed in Asia	C. neomastoideum
–	Cheilocystidia clavate, some mucronate or with apical excrescences; clamp connections absent at base of basidia and cheilocystidia; distributed in North America	C. subrhacodes
11	Spore print green; lamellae completely greenish with age	C. molybdites
–	Spore print white or off-white; lamellae whitish or brownish with age, never totally green; sometimes a bluish-green shade is present near the stipe	12
12	Cheilocystidia sphaeropedunculate to broadly clavate, often catenate	13
–	Cheilocystidia narrowly clavate to clavate	14
13	Pileus squamules of similar colour as background, olivaceous brown to greyish-brown	C. olivieri
–	Pileus squamules brown (different shades) on white to cream background, which is distinctly paler than squamules	C. rhacodes
14	Clamp connections absent at base of basidia and cheilocystidia, cheilocystidia clavate to fusiform; annulus relatively simple	C. nothorhacodes
–	Clamp connections present at base of basidia and cheilocystidia, cheilocystidia narrowly clavate to fusiform; annulus relatively simple or complex	15
15	Basidiocarps with abruptly to marginately bulbous stipe base; annulus relatively simple, without a double crown, but with a tough brown patch on the underside	C. brunneum
–	Basidiocarps with widened base of stipe, but not abruptly so; annulus complex, with double crown	16
16	Spore print yellowish-white to pale yellow to greyish-green, basidiospores greenish-white, 8–11 × 5–6 (7) µm	C. globosum
–	Spore print white, basidiospores hyaline, 10–10.7 (11) × (7) 8–8.5 (9.5) µm	C. pseudoglobosum

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Discussion

Monophyly and infrageneric classification of Chlorophyllum

In the present study, based on the extensive dataset comprising 75 % of all known species, four gene regions were used to clarify the evolutionary relationships of Chlorophyllum, in separate and multi-locus analyses. Based on molecular data, the genus Chlorophyllum is monophyletic and the genus Clarkeinda appeared to be the likely sister clade to Chlorophyllum (Figure 2). A six-section infrageneric classification of Chlorophyllum was proposed based on the demarked morphological characters of well-supported clades. This phylogeny also elucidated the systematic positions of previously not included taxa, such as C. demangei, C. sphaerosporum and C. subrhacodes (Figure 2). In addition, two new species, C. africanum and C. palaeotropicum have been added.

Useful morphological characters in delimitation sections and species within Chlorophyllum

The morphological diversity within Chlorophyllum is mainly reflected in the general appearance of basidiocarp, colour reaction of context when bruised, the structure of pileus squamules, colour, shape and size of basidiospores and presence / absence of germ pore, shape of cheilocystidia and presence /absence of clamp connections. Based on the morphological characters chiefly used for species delimitation, morphological features in Chlorophyllum appear to be fast evolving and prone to shifts and no synapomorphic characteristics have been found to consistently separate the sections. This is probably due to the fact that major evolutionary radiations might have occurred in a relatively short time as it can be seen that most of the deep branches in the phylogenies are short. Nevertheless, several character combinations are phylogenetically informative thus are useful for delineating sections and species.

1. General habitus of basidiocarps. The sequestrate (secotioid / gasteroid) form of basidiocarps is considered to be the result of selective pressures (Bruns et al. 1989) and the loss of forcible spore discharge has been found in several predominantly agaricoid genera within the family Agaricaceae (Gube and Dörfelt 2012), e.g. Agaricus (Vellinga 2004), Macrolepiota (Lebel and Syme 2012) and Lepiota (Ge and Smith 2013; Vidal et al. 2015). The transition from agaricoid to secotioid or gasteroid is thought to be irreversible (Hibbett 2004). The majority of Chlorophyllum species is agaricoid and the secotioid / gasteroid habit is an apomorphy for the genus Chlorophyllum and consequently can be used together with other characteristics to distinguish clades. These phylogenetic analyses demonstrate that the secotioid C. agaricoides forms an independent clade, while the gasteroid C. arizonicum and C. lusitanicum jointly form a clade that is sister to the agaricoid C. sphaerosporum (Figure 2). These results suggest that the gasteroid C. arizonicum and C. lusitanicum derived from the same ancestor as C. sphaerosporum, while the secotioid C. agaricoides may have evolved independently from a different agaricoid ancestor in the genus.

2. Colour reaction of the context when bruised. The context of Chlorophyllum species shows reddening changes when exposed to the air, from light sienna, pinkish, pinkish cinnamon, reddish, dull brownish-orange to orange red (Crous et al. 2015a; Crous et al. 2015b; Ge and Yang 2006; Vellinga 2003a, 2003b). These changes are difficult to quantify and have not been uniformly recorded according to the same criteria and thus, cannot be used to distinguish sections. Nevertheless, this character can be used in combination with other characters in delimitation of species as this character varies amongst species: some species have a strong reddening reaction, some only weakly change pinkish, in others the context becomes reddish first, then changes to brown.

3. Structure of pileus squamules. The squamules in Chlorophyllum are considered to be a hymeniform layer in general, but can be further divided into three different types: i. a palisade of hyphae with terminal clavate to subfusiform elements; ii. a tightly packed hymeniderm of cylindrical and flexuous, narrowly clavate or narrowly lageniform elements; and iii. a hymeniderm of loosely arranged clavate to subfusiform hyphae. These different types of structure of squamules can be used to delimit sections in combination with other characters. For instance, the squamules of species in section Chlorophyllum are of type i, those of section Rhacodium are of type ii, while those of section Ellipsoidosporum and section Sphaerosporum are of type iii.

4. Colour, shape and size of basidiospores and presence/absence of germ pore. The basidiospores of Chlorophyllum vary from subglobose to globose without germ pore, ellipsoid without germ pore and amygdaliform to ellipsoid with large germ pore that causes the spore apex to be obviously truncated. The “ellipsoid without germ pore” shape is a conspicuous synapomorphy for the Ellipsoidospororum clade. Similarly, “subglobose to globose basidiospores without a germ pore” is characteristic of the Sphaerospororum clade, while all species in section Parvispororum have relatively small (less than 10 μm long) basidiospores with a truncate apex. Basidiospores can be hyaline or olive to greenish and this character can be used to separate certain clades: species within the Chlorophyllum clade and Endoptychorum clade may have olive to greenish basidiospores, while the remaining clades have hyaline basidiospores.

5. Shape of cheilocystidia. Shape of cheilocystidia within Chlorophyllum ranges from subcylindrical, slightly fusiform, narrowly clavate, clavate, mucronate clavate, broadly clavate to sphaeropedunculate. These changes are informative in recognising certain, but not all sections. For example, the cheilocystidia of species in section Ellipsoidospororum are narrowly clavate to subcylindrical, while in other sections, the cheilocystidia are clavate to sphaeropedunculate.

6. Presence/absence clamp connections. Amongst the species studied in the present study, most species have clamp connections with the exception of the following five species: C. agaricoides, C. africanum, C. demangei, C. nothorhacodes and C. subrhacodes. Since clamp connections occur in five different sections, this character is not informative at section level.

Conclusions and future directions

This study constitutes the first multigene molecular phylogenetic analysis of the genus Chlorophyllum. Previous analyses included only a limited number of ITS/nrLSU sequences. This study significantly increased the molecular sampling for this group and included a wider array of taxa from a broader geographic range. Several previously unsampled species were included (i.e. C. africanum, C. demangei, C. palaeotropicum, C. sphaerosporum and C. subrhacodes). Based on these results, the genus Chlorophyllum is monophyletic and composed of six well-supported monophyletic groups that were classified as sections (Figure 2). Each section is also characterised by several morphological features. Although the relationships amongst all sections are not yet fully resolved, relationships amongst species within sections are. The majority of Chlorophyllum species occurs in disturbed or arid habitats in subtropical to tropical regions and many species have a wide distribution over more than one continent. The role of humans in some of these distribution patterns should be investigated.

Supplementary Material

XML Treatment for Chlorophyllum sect. Chlorophyllum

mycokeys.32.23831-treatment1.xml^{(5.1KB, xml)}

XML Treatment for Chlorophyllum sect. Ellipsoidospororum

mycokeys.32.23831-treatment2.xml^{(8.1KB, xml)}

XML Treatment for Chlorophyllum sect. Endoptychorum

mycokeys.32.23831-treatment3.xml^{(4.4KB, xml)}

XML Treatment for Chlorophyllum sect. Parvispororum

mycokeys.32.23831-treatment4.xml^{(4.9KB, xml)}

XML Treatment for Chlorophyllum sect. Rhacodium

mycokeys.32.23831-treatment5.xml^{(7.3KB, xml)}

XML Treatment for Chlorophyllum sect. Sphaerospororum

mycokeys.32.23831-treatment6.xml^{(4.9KB, xml)}

XML Treatment for Chlorophyllum africanum

mycokeys.32.23831-treatment7.xml^{(19.2KB, xml)}

XML Treatment for Chlorophyllum palaeotropicum

mycokeys.32.23831-treatment8.xml^{(20KB, xml)}

XML Treatment for Chlorophyllum demangei

mycokeys.32.23831-treatment9.xml^{(9.1KB, xml)}

XML Treatment for Chlorophyllum globosum

mycokeys.32.23831-treatment10.xml^{(15.5KB, xml)}

Acknowledgments

We are very grateful to Drs Z.H. Chen and P. Zhang of Hunan Normal University and Drs G. Wu, K. Zhao and Q. Zhao of Kunming Institute of Botany (KIB), Chinese Academy of Sciences for providing collections. We would like to thank Dr T.Z. Wei of the Institute of Microbiology, Chinese Academy of Sciences for sending us specimens on loan and Ms Shu Yao for assistance with lab work. This study was supported by the National Natural Science Foundation of China (No. 31461143031 and 31670024).

Citation

Ge Z-W, Jacobs A, Vellinga EC, Sysouphanthong P, van der Walt R, Lavorato C, An Y-F, Yang ZL (2018) A multi-gene phylogeny of Chlorophyllum (Agaricaceae, Basidiomycota): new species, new combination and infrageneric classification. MycoKeys 32: 65–90. https://doi.org/10.3897/mycokeys.32.23831

Funding Statement

the National Natural Science Foundation of China (No. 31461143031 and 31670024)

Supplementary materials

Supplementary material 1

Figure S1. Maximum Likelihood tree showing the monophyly of Chlorophyllum inferred from the rpb2 data set

This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Zai-Wei Ge, Adriaana Jacobs, Else C. Vellinga, Phongeun Sysouphanthong, Retha van der Walt, Carmine Lavorato, Yi-Feng An, Zhu L. Yang

Data type: molecular data

Explanation note: Bootstrap values (>50) are indicated along nodes. The clade where Chlorophyllum species are nested is highlighted in grey.

mycokeys-32-065-s001.pdf^{(246.6KB, pdf)}

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Ge Z-W, Smith ME. (2013) Phylogenetic analysis of rDNA sequences indicates that the sequestrate Amogaster viridiglebus is derived from within the agaricoid genus Lepiota (Agaricaceae). Mycological Progress 12: 151–155. https://doi.org/10.1007/s11557-012-0841-y [Google Scholar]
Ge Z-W, Yang Z-L. (2017) Pseudolepiota zangmui gen. et sp nov. (Agaricaceae, Basidiomycota), a new white-spored mushroom from China. Phytotaxa 312: 247–255. https://doi.org/10.11646/phytotaxa.312.2.7 [Google Scholar]
Ge Z-W, Yang ZL, Qasim T, Nawaz R, Khalid AN, Vellinga EC. (2015) Four new species in Leucoagaricus (Agaricaceae, Basidiomycota) from Asia. Mycologia 107: 1033–1044. https://doi.org/10.3852/14-351 [DOI] [PubMed] [Google Scholar]
Ge ZW, Yang ZL. (2006) The genus Chlorophyllum (Basidiomycetes) in China. Mycotaxon 96: 181–191. [Google Scholar]
Gube M, Dörfelt H. (2012) Gasteromycetation in Agaricaceae sl (Basidiomycota): Morphological and ecological implementations. Feddes Repertorium 122: 367–390. https://doi.org/10.1002/fedr.201000025 [Google Scholar]
Hibbett DS. (2004) Trends in morphological evolution in homobasidiomycetes inferred using maximum likelihood: A comparison of binary and multistate approaches. Systematic Biology 53: 889–903. https://doi.org/10.1080/10635150490522610 [DOI] [PubMed] [Google Scholar]
Katoh K, Asimenos G, Toh H. (2009) Multiple alignment of DNA sequences with MAFFT. Methods in Molecular Biology 537: 39–64. https://doi.org/10.1007/978-1-59745-251-9_3 [DOI] [PubMed] [Google Scholar]
Kirk PM, Cannon PF, Minter DW, Stalpers JA. (Eds) (2011) Dictionary of Fungi 10th Edition. CABI, 640 pp.
Kornerup A, Wanscher JHK. (1978) The Methuen Handbook of Colour. 3rd ed. Methuen Ltd., London & Eyre, 252 pp. [Google Scholar]
Largent DL, Johnson D, Watling R. (1977) How to identify mushrooms to genus, III: Microscopic Features. Mad River Press, Eureka, California, 148 pp.
Lebel T, Syme A. (2012) Sequestrate species of Agaricus and Macrolepiota from Australia: new species and combinations and their position in a calibrated phylogeny. Mycologia 104: 496–520. https://doi.org/10.3852/11-092 [DOI] [PubMed] [Google Scholar]
Matheny PB. (2005) Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales). Molecular Phylogenetics & Evolution 35: 1–20. https://doi.org/10.1016/j.ympev.2004.11.014 [DOI] [PubMed] [Google Scholar]
Mossebo DC, Akoa A, Eteme RA. (2000) Macrolepiota globosa et Nothopanus nsimalenensis, deux nouvelles espèces fongiques du Cameroun. Mycotaxon 76: 267–278. [Google Scholar]
Nylander JAA. (2004) MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University.
Pearson AA. (1950) Cape agarics and boleti. Transactions of the British Mycological Society 33(3–4): 276–316. https://doi.org/10.1016/S0007-1536(50)80080-3 [Google Scholar]
Pegler DN. (1986) Agaric flora of Sri Lanka. Kew Bull add Series XII, Royal Botanic Gardens.
Rehner SA, Buckley E. (2005) A Beauveria phylogeny inferred from nuclear ITS and EF1-α sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia 97: 84–98. https://doi.org/10.1080/15572536.2006.11832842 [DOI] [PubMed] [Google Scholar]
Sathe AV, Deshpande SD, Kulkarni SM, Daniel J. (1981 (‘1980’)) Agaricales (mushrooms) of South-West India. MACS, Pune, India. Monograph No. 1.
Stamatakis A, Blagojevic F, Nikolopoulos DS, Antonopoulos CD. (2007) Exploring New Search Algorithms and Hardware for Phylogenetics: RAxML Meets the IBM Cell. Journal of Vlsi Signal Processing Systems for Signal Image & Video Technology 48: 271–286. https://doi.org/10.1007/s11265-007-0067-4 [Google Scholar]
Vellinga EC. (2002) New combinations in Chlorophyllum. Mycotaxon 83: 415–417. [Google Scholar]
Vellinga EC. (2003a) Chlorophyllum and Macrolepiota (Agaricaceae) in Australia. Australian Systematic Botany 16: 361–370. https://doi.org/10.1071/sb02013 [Google Scholar]
Vellinga EC. (2003b) Type studies in Agaricaceae - Chlorophyllum rachodes and allies. Mycotaxon 85: 259–270. [Google Scholar]
Vellinga EC. (2004a) Ecology and distribution of lepiotaceous fungi (Agaricaceae) - A review. Nova Hedwigia 78: 273–299. https://doi.org/10.1127/0029-5035/2004/0078-0273 [Google Scholar]
Vellinga EC. (2004b) Genera in the family Agaricaceae: evidence from nrITS and nrLSU sequences. Mycological Research 108: 354–377. https://doi.org/10.1017/s0953756204009700 [DOI] [PubMed] [Google Scholar]
Vellinga EC, De Kok RPJ. (2002) (1539) Proposal to conserve the name Chlorophyllum Massee against Endoptychum Czern. (Agaricaceae). Taxon 51: 563–564. Https://doi.org/10.2307/1554876 [Google Scholar]
Vellinga EC, de Kok RPJ, Bruns TD. (2003) Phylogeny and taxonomy of Macrolepiota (Agaricaceae). Mycologia 95: 442–456. https://doi.org/10.2307/3761886 [PubMed] [Google Scholar]
Vellinga EC, Sysouphanthong P, Hyde KD. (2011) The family Agaricaceae: phylogenies and two new white-spored genera. Mycologia 103: 494–509. https://doi.org/10.3852/10-204 [DOI] [PubMed] [Google Scholar]
Vidal JM, Juste P, Garcia F, Bellanger J-M, Moreau P-A. (2015) Secotioid fungi of the genus Lepiota: two new species, two new combinations and a re-evaluation of the genus Cribrospora. Boletín Micológico FAMCAL 10: 47–71 [Google Scholar]
White TJ, Bruns TD, Lee S, Taylor J. (1990) Analysis of phylogenetic relationships by amplification and direct sequencing of ribosomal RNA genes. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ. (Eds) PCR protocols: a guide to methods and applications. Academic, San Diego, 315–322.
Wilson KL. (2017) Report of the General Committee 16. Taxon 66(1): 189–190. https://doi.org/10.12705/661.15 [Google Scholar]
Yang Z-L. (2000) Type studies on agarics described by N. Patouillard (and his co-authors) from Vietnam. Mycotaxon 75: 431–476. [Google Scholar]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

XML Treatment for Chlorophyllum sect. Chlorophyllum

mycokeys.32.23831-treatment1.xml^{(5.1KB, xml)}

XML Treatment for Chlorophyllum sect. Ellipsoidospororum

mycokeys.32.23831-treatment2.xml^{(8.1KB, xml)}

XML Treatment for Chlorophyllum sect. Endoptychorum

mycokeys.32.23831-treatment3.xml^{(4.4KB, xml)}

XML Treatment for Chlorophyllum sect. Parvispororum

mycokeys.32.23831-treatment4.xml^{(4.9KB, xml)}

XML Treatment for Chlorophyllum sect. Rhacodium

mycokeys.32.23831-treatment5.xml^{(7.3KB, xml)}

XML Treatment for Chlorophyllum sect. Sphaerospororum

mycokeys.32.23831-treatment6.xml^{(4.9KB, xml)}

XML Treatment for Chlorophyllum africanum

mycokeys.32.23831-treatment7.xml^{(19.2KB, xml)}

XML Treatment for Chlorophyllum palaeotropicum

mycokeys.32.23831-treatment8.xml^{(20KB, xml)}

XML Treatment for Chlorophyllum demangei

mycokeys.32.23831-treatment9.xml^{(9.1KB, xml)}

XML Treatment for Chlorophyllum globosum

mycokeys.32.23831-treatment10.xml^{(15.5KB, xml)}

Supplementary material 1

Figure S1. Maximum Likelihood tree showing the monophyly of Chlorophyllum inferred from the rpb2 data set

Zai-Wei Ge, Adriaana Jacobs, Else C. Vellinga, Phongeun Sysouphanthong, Retha van der Walt, Carmine Lavorato, Yi-Feng An, Zhu L. Yang

Data type: molecular data

Explanation note: Bootstrap values (>50) are indicated along nodes. The clade where Chlorophyllum species are nested is highlighted in grey.

mycokeys-32-065-s001.pdf^{(246.6KB, pdf)}

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[B12] Ge ZW, Yang ZL. (2006) The genus Chlorophyllum (Basidiomycetes) in China. Mycotaxon 96: 181–191. [Google Scholar]

[B13] Gube M, Dörfelt H. (2012) Gasteromycetation in Agaricaceae sl (Basidiomycota): Morphological and ecological implementations. Feddes Repertorium 122: 367–390. https://doi.org/10.1002/fedr.201000025 [Google Scholar]

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[B18] Largent DL, Johnson D, Watling R. (1977) How to identify mushrooms to genus, III: Microscopic Features. Mad River Press, Eureka, California, 148 pp.

[B19] Lebel T, Syme A. (2012) Sequestrate species of Agaricus and Macrolepiota from Australia: new species and combinations and their position in a calibrated phylogeny. Mycologia 104: 496–520. https://doi.org/10.3852/11-092 [DOI] [PubMed] [Google Scholar]

[B20] Matheny PB. (2005) Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales). Molecular Phylogenetics & Evolution 35: 1–20. https://doi.org/10.1016/j.ympev.2004.11.014 [DOI] [PubMed] [Google Scholar]

[B21] Mossebo DC, Akoa A, Eteme RA. (2000) Macrolepiota globosa et Nothopanus nsimalenensis, deux nouvelles espèces fongiques du Cameroun. Mycotaxon 76: 267–278. [Google Scholar]

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[B23] Pearson AA. (1950) Cape agarics and boleti. Transactions of the British Mycological Society 33(3–4): 276–316. https://doi.org/10.1016/S0007-1536(50)80080-3 [Google Scholar]

[B24] Pegler DN. (1986) Agaric flora of Sri Lanka. Kew Bull add Series XII, Royal Botanic Gardens.

[B25] Rehner SA, Buckley E. (2005) A Beauveria phylogeny inferred from nuclear ITS and EF1-α sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia 97: 84–98. https://doi.org/10.1080/15572536.2006.11832842 [DOI] [PubMed] [Google Scholar]

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[B27] Stamatakis A, Blagojevic F, Nikolopoulos DS, Antonopoulos CD. (2007) Exploring New Search Algorithms and Hardware for Phylogenetics: RAxML Meets the IBM Cell. Journal of Vlsi Signal Processing Systems for Signal Image & Video Technology 48: 271–286. https://doi.org/10.1007/s11265-007-0067-4 [Google Scholar]

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[B29] Vellinga EC. (2003a) Chlorophyllum and Macrolepiota (Agaricaceae) in Australia. Australian Systematic Botany 16: 361–370. https://doi.org/10.1071/sb02013 [Google Scholar]

[B30] Vellinga EC. (2003b) Type studies in Agaricaceae - Chlorophyllum rachodes and allies. Mycotaxon 85: 259–270. [Google Scholar]

[B31] Vellinga EC. (2004a) Ecology and distribution of lepiotaceous fungi (Agaricaceae) - A review. Nova Hedwigia 78: 273–299. https://doi.org/10.1127/0029-5035/2004/0078-0273 [Google Scholar]

[B32] Vellinga EC. (2004b) Genera in the family Agaricaceae: evidence from nrITS and nrLSU sequences. Mycological Research 108: 354–377. https://doi.org/10.1017/s0953756204009700 [DOI] [PubMed] [Google Scholar]

[B33] Vellinga EC, De Kok RPJ. (2002) (1539) Proposal to conserve the name Chlorophyllum Massee against Endoptychum Czern. (Agaricaceae). Taxon 51: 563–564. Https://doi.org/10.2307/1554876 [Google Scholar]

[B34] Vellinga EC, de Kok RPJ, Bruns TD. (2003) Phylogeny and taxonomy of Macrolepiota (Agaricaceae). Mycologia 95: 442–456. https://doi.org/10.2307/3761886 [PubMed] [Google Scholar]

[B35] Vellinga EC, Sysouphanthong P, Hyde KD. (2011) The family Agaricaceae: phylogenies and two new white-spored genera. Mycologia 103: 494–509. https://doi.org/10.3852/10-204 [DOI] [PubMed] [Google Scholar]

[B36] Vidal JM, Juste P, Garcia F, Bellanger J-M, Moreau P-A. (2015) Secotioid fungi of the genus Lepiota: two new species, two new combinations and a re-evaluation of the genus Cribrospora. Boletín Micológico FAMCAL 10: 47–71 [Google Scholar]

[B37] White TJ, Bruns TD, Lee S, Taylor J. (1990) Analysis of phylogenetic relationships by amplification and direct sequencing of ribosomal RNA genes. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ. (Eds) PCR protocols: a guide to methods and applications. Academic, San Diego, 315–322.

[B38] Wilson KL. (2017) Report of the General Committee 16. Taxon 66(1): 189–190. https://doi.org/10.12705/661.15 [Google Scholar]

[B39] Yang Z-L. (2000) Type studies on agarics described by N. Patouillard (and his co-authors) from Vietnam. Mycotaxon 75: 431–476. [Google Scholar]

PERMALINK

A multi-gene phylogeny of Chlorophyllum (Agaricaceae, Basidiomycota): new species, new combination and infrageneric classification

Zai-Wei Ge

Adriaana Jacobs

Else C Vellinga

Phongeun Sysouphanthong

Retha van der Walt

Carmine Lavorato

Yi-Feng An

Zhu L Yang

Abstract Abstract

Introduction

Materials and methods

Taxon sampling and morphological studies

DNA extraction, primers, PCR and sequencing

Phylogenetic analyses

Figure 1.

Table 1.

Results

Figure 2.

Taxonomy

Infrageneric classification of Chlorophyllum

Chlorophyllum sect. Chlorophyllum

Type.

Description.

Discussion.

Chlorophyllum sect. Ellipsoidospororum

Diagnosis.

Type.

Description.

Discussion.

Chlorophyllum sect. Endoptychorum

Basionym.

Type.

Description.

Discussion.

Chlorophyllum sect. Parvispororum

Diagnosis.

Type.

Description.

Discussion.

Chlorophyllum sect. Rhacodium

Diagnosis.

Type.

Description.

Discussion.

Chlorophyllum sect. Sphaerospororum

Diagnosis.

Type.

Description.

Discussion.

Recognition of two new species and the transfer of Lepiota demangei from Lepiota to Chlorophyllum

Chlorophyllum africanum

Figure 3.

Figure 4.

Diagnosis.

Type.

Description.

Distribution.

Ecology.

Etymologyл

Additional specimens examined.

Discussion.

Chlorophyllum palaeotropicum

Figure 5.

Diagnosis.

Type.

Description.

Distribution.

Ecology.

Etymology.

Additional specimens examined.

Discussion.

Chlorophyllum demangei

Basionym.

Type.

Description.

Distribution.

Ecology.

Additional specimens examined.