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. 2018 Feb 28;7:244. [Version 1] doi: 10.12688/f1000research.14060.1

Table 1. Summary of the most frequently mapping putative plant miRNAs in the Liu et al. analysis of datasets from Yuan et al..

Here, data from only 190 of 192 plasma samples were included, since all but the excluded 2 samples were successfully sequenced twice. miRNA inclusion criteria were: 1) Three total mapped reads according to Liu et al.’s data in at least 10% of the samples and 2) discoverable putative mature sequence through miRBase, miRMaid, or miRNEST 2.0. An “estimated median rpm” value was calculated based on median total counts, average reads, and the midoint of the reported mapping percentage range. miRNAs with perfect human matches are in red. Note that only MIR2910 consistently exceeds the rpm threshold set by Yuan et al..

Putative miRNA Samples w/
reads ≥3
Average total
counts
Median total
counts
Max Est. median rpm
in avg sample
peu-MIR2910 190 1143.4 1072.5 2020 180.6
peu-MIR2916 190 119.7 115 315 19.4
tae-MIR2005 178 8.7 9 23 1.5
peu-MIR2914 169 14.3 9 348 1.5
tae-MIR2018 167 5.9 6 14 1.0
ath-MIRf10482-akr 161 7.3 6 29 1.0
ppt-MIR896 147 4.6 4 15 0.7
ptc-MIRf12412-akr 47 2.7 2 18 0.3
peu-MIR2911 42 2.6 2 10 0.3
ppt-MIR894 39 2.3 2 18 0.3
ptc-MIRf12524-akr 28 1.8 1 5 0.2