Table 1.
MSIplus and MSI-PCR Microsatellite Loci
| Target Loci | Panel(s) | Loci Coordinates (GRCh37/hg19) | Repeat Type | Gene |
|---|---|---|---|---|
| Bat25 | MSI-PCR, MSIplus | chr4:55598212–55598236 | (T)25 | KIT, intronic |
| Bat-26 | MSI-PCR, MSIplus | chr2:47641560–47641586 | (A)27 | MSH2, intronic |
| MONO-27 | MSI-PCR, MSIplus | chr2:39564894–39564921 | (T)28 | MAP4K3, intronic |
| NR-21 | MSI-PCR, MSIplus | chr14:23652347–23652367 | (A)21 | SLC7A8, exonic |
| NR-24 | MSI-PCR, MSIplus | chr2:95849362–95849384 | (T)23 | ZNF2, exonic |
| MSI-01 | MSIplus | chr1:201754411–201754427 | (T)17 | NAV1, intronic |
| MSI-03 | MSIplus | chr2:62063094–62063110 | (A)17 | FAM161A, intronic |
| MSI-04 | MSIplus | chr2:108479623–108479640 | (T)18 | RGPD4, intronic |
| MSI-06 | MSIplus | chr5:172421761–172421775 | (T)15 | ATP6V0E1, intronic |
| MSI-07 | MSIplus | chr6:142691951–142691967 | (T)17 | GPR126, intronic |
| MSI-08 | MSIplus | chr7:1787520–1787536 | (A)17 | ELFN1, exonic |
| MSI-09 | MSIplus | chr7:74608741–74608753 | (T)13 | GTF2IP1, intronic |
| MSI-11 | MSIplus | chr11:106695515–106695526 | (T)12 | GUCY1A2, intronic |
| MSI-12 | MSIplus | chr15:45897772–45897785 | (T)14 | BLOC1S6, intronic |
| MSI-13 | MSIplus | chr16:18882660–18882674 | (A)15 | SMG1, intronic |
| MSI-14 | MSIplus | chr17:19314918–19314935 | (T)18 | RNF112, intronic |
| HSPH1-T17 | MSIplus | chr13:31722621–31722637 | (A)17 | HSPH1, intronic |
| EWSR1 | MSIplus | chr22:29696469–29696484 | (T)16 | EWSR1, exonic |
For coordinates of the loci captured by Large-Panel NGS see Additional file 2: Table S1