Table 1.
Fisher discriminant scores of PC projections (A: prostate cancer data, B: mouse metabolism data and C: TCGA cancer data)
| A. Prostate cancer data | |||||||
| Yu | Lapointe | Tomlins | Varambally | Average | |||
| Yu | 15.37 | 24.01 | 10.58 | 16.04 | 16.50 | ||
| Lapointe | 9 | 21.20 | 11.14 | 10.41 | 12.94 | ||
| Tomlins | 9.82 | 19.86 | 10.67 | 8.04 | 12.10 | ||
| Varambally | 11.96 | 26.41 | 10.69 | 26.17 | 18.81 | ||
| Pooled | 6.39 | 12.41 | 6.74 | 6.93 | 8.12 | ||
| SSC | 14.71 | 26.45 | 11.37 | 13.69 | 16.56 | ||
| JIVE | 5.72 | 11.01 | 9.07 | 15.65 | 10.36 | ||
| SSC+PMD | 15.34 | 29.80 | 9.40 | 21.17 | 18.93 | ||
| B. Mouse metabolism data | |||||||
| Brown | Heart | Liver | Ske | Average | |||
| Brown | 8.64 | 12.60 | 7.75 | 8.15 | 9.28 | ||
| Heart | 16.65 | 24.43 | 15.28 | 10.91 | 16.82 | ||
| Liver | 3.83 | 5.48 | 2.19 | 5.23 | 4.18 | ||
| Ske | 15.51 | 16.91 | 12.93 | 20.93 | 16.57 | ||
| Pooled | 5.15 | 11.66 | 6.59 | 7.30 | 7.68 | ||
| SSC | 8.28 | 15.05 | 8.40 | 8.93 | 10.17 | ||
| JIVE | 3.59 | 5.83 | 3.75 | 3.35 | 4.13 | ||
| SSC+PMD | 19.11 | 29.17 | 22.90 | 22.68 | 23.47 | ||
| C. TCGA cancer data | |||||||
| BRCA | COAD | KIRC | LUAD | READ | STAD | Average | |
| BRCA | 18.16 | 22.22 | 20.73 | 12.17 | 15.04 | 8.17 | 16.08 |
| COAD | 20.50 | 25.50 | 28.23 | 13.87 | 17.50 | 10.70 | 19.38 |
| KIRC | 22.59 | 29.13 | 32.70 | 16.25 | 20.33 | 13.78 | 22.46 |
| LUAD | 21.81 | 25.30 | 27.64 | 14.47 | 17.03 | 11.09 | 19.55 |
| READ | 20.27 | 21.29 | 18.43 | 11.06 | 15.35 | 7.02 | 15.57 |
| STAD | 21.84 | 26.17 | 29.34 | 14.89 | 17.40 | 11.98 | 20.27 |
| Pooled | 28.28 | 30.11 | 36.10 | 13.98 | 23.02 | 15.13 | 24.44 |
| SSC | 24.93 | 21.02 | 16.88 | 12.52 | 13.12 | 7.94 | 16.07 |
| JIVE | 19.69 | 20.15 | 18.50 | 10.68 | 12.77 | 8.90 | 15.11 |
| SSC+PMD | 16.96 | 29.66 | 27.12 | 14.72 | 20.34 | 13.98 | 20.46 |