Table 2.
Nucleotide alignment results (megaBLAST) querying putative biosynthetic gene clusters detected in the Chromobacterium sp. Panama genome by antiSMASH against the genomes of the remaining Chromobacterium spp. used in this study.
| Cluster | Type | Source | Size (kb) | megaBLAST similarity index | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CAQU | CHAE | CPIS | CPSE | CSUB | CVAC | CVIO | CW10 | |||||
| Cluster 01 | Homoserine Lactone | antiSMASH | 20.7 | 20% | 89% | 9% | 23% | 21% | 25% | 23% | 90% | |
| Cluster 02 | Saccharide | ClusterFinder | 25.0 | 65% | 86% | 66% | 66% | 65% | 60% | 70% | 86% | |
| Cluster 03 | NRPS | antiSMASH | 73.0 | 28% | 86% | 25% | 28% | 28% | 28% | 28% | 86% | |
| Cluster 04 | Fatty Acid | ClusterFinder | 33.7 | 68% | 91% | 60% | 65% | 69% | 66% | 65% | 91% | |
| Cluster 05 | NRPS | antiSMASH | 45.1 | 27% | 91% | 24% | 28% | 27% | 28% | 28% | 90% | |
| Cluster 06 | Terpene | antiSMASH | 21.7 | 31% | 93% | 31% | 27% | 31% | 24% | 27% | 84% | |
| Cluster 07 | NRPS | antiSMASH | 43.2 | 23% | 47% | 23% | 26% | 23% | 24% | 25% | 52% | |
| Cluster 08 | Putative | ClusterFinder | 15.3 | 49% | 83% | 37% | 50% | 50% | 54% | 57% | 87% | |
| Cluster 09 | Putative | ClusterFinder | 4.4 | 52% | 88% | 54% | 39% | 51% | 54% | 39% | 80% | |
| Cluster 10 | Putative | ClusterFinder | 9.5 | 71% | 94% | 71% | 72% | 72% | 72% | 72% | 94% | |
| Cluster 11 | Polyunsaturated Fatty Acid/Other Ketosynthase | antiSMASH | 51.3 | 16% | 89% | 16% | 13% | 16% | 14% | 12% | 64% | |
| Cluster 12 | Putative | ClusterFinder | 8.8 | 39% | 93% | 43% | 40% | 39% | 43% | 43% | 92% | |
| Cluster 13 | NRPS | antiSMASH | 51.5 | 21% | 47% | 19% | 27% | 23% | 23% | 26% | 83% | |
| Cluster 14 | Putative | ClusterFinder | 7.2 | 53% | 84% | 52% | 53% | 53% | 55% | 54% | 84% | |
| Cluster 15 | Bacteriocin | antiSMASH | 10.8 | 28% | 42% | 28% | 28% | 28% | 28% | 23% | 72% | |
| Cluster 16 | Putative | ClusterFinder | 8.5 | 6% | 85% | 0% | 3% | 3% | 5% | 3% | 81% | |
| Cluster 17 | Bacteriocin | antiSMASH | 10.8 | 49% | 91% | 45% | 61% | 49% | 60% | 61% | 93% | |
| Cluster 18 | NRPS | antiSMASH | 43.9 | 34% | 86% | 33% | 27% | 34% | 29% | 30% | 83% | |
| Cluster 19 | Fatty Acid | ClusterFinder | 21.1 | 74% | 92% | 75% | 76% | 74% | 75% | 76% | 92% | |
| Cluster 20 | Putative | ClusterFinder | 8.9 | 9% | 95% | 9% | 65% | 9% | 65% | 65% | 95% | |
| Cluster 21 | Saccharide/NRPS | ClusterFinder | 81.2 | 40% | 60% | 27% | 36% | 38% | 31% | 34% | 70% | |
| Cluster 22 | Saccharide | ClusterFinder | 30.1 | 30% | 33% | 28% | 29% | 30% | 31% | 28% | 33% | |
| Cluster 23 | Putative | ClusterFinder | 6.5 | 0% | 0% | 0% | 0% | 0% | 0% | 0% | 87% | |
| Cluster 24 | Putative | ClusterFinder | 4.6 | 84% | 91% | 83% | 80% | 84% | 83% | 81% | 91% | |
| Cluster 25 | Putative | ClusterFinder | 4.8 | 74% | 89% | 66% | 78% | 74% | 74% | 79% | 91% | |
| Cluster 26 | NRPS | antiSMASH | 49.6 | 16% | 63% | 18% | 17% | 16% | 13% | 13% | 60% | |
| Cluster 27 | Putative | ClusterFinder | 8.5 | 20% | 89% | 20% | 20% | 20% | 22% | 20% | 89% | |
| Cluster 28 | Putative | ClusterFinder | 11.7 | 13% | 22% | 0% | 6% | 6% | 13% | 6% | 21% | |
| Cluster 29 | Saccharide | ClusterFinder | 31.2 | 30% | 90% | 26% | 32% | 30% | 26% | 30% | 91% | |
| Cluster 30 | NRPS | antiSMASH | 6.1 | 0% | 4% | 0% | 2% | 0% | 2% | 0% | 92% | |
| Cluster 31 | NRPS | antiSMASH | 3.1 | 5% | 90% | 0% | 0% | 5% | 0% | 0% | 89% | |
Similarity index compounded by multiplying query cover with % identity; full results available in Supplementary Table S1. A similarity index of 90% or above indicates that said C. sp. Panama gene cluster is present in the genome of that particular species; one of 30% or below indicates with confidence that the cluster is not replicated in the other genome.