Table 2.

List of clonotype definitions supported by IRProfiler

Index	Clonotype Name	Components	Comment
1	V + D + J + CDR3	(V-gene, D-gene, J-gene, CDR3-AA)	IMGT Clonotype (AA) with the allele information omitted
2	V + J + CDR3	(V-gene, J-gene, CDR3-AA)	No D-gene information; caters for D-gene assignment ambiguity
3	V + CDR3	(V-gene, CDR3-AA)	Specialized definition, focusing on V-gene
4	J + CDR3	(J-gene, CDR3-AA)	Specialized definition, focusing on J-gene
5	CDR3	(CDR3-AA)	The least detailed definition including only CDR3-AA

CDR3-AA denotes the animoacid translation of the CDR3 including the anchor animoacids (104 and 118)