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. 2018 Jan 22;(131):55451. doi: 10.3791/55451
Primer Genus Taxid ID Species Divergent primer
SSU Arabidopsis 3701 kamchatica, thaliana and lyrata -
Vicia 3904 villosa, americana, unijuga, amoenane, amurensis, craccamal, pseudo-orobus, multicaulis, japonica, ramuliflora and faba
Trifolium 3898 alexandrinum, montanum, resupinatum and repens -
Nicotiana 4085 tabacum, benthamiana, otophora, picilla, bigelovii, palmeri, tomentosiformis, tomentosa, digluta, kawakamii, clevelandii, nesophila , solanifolia, cordifolia, debneyi, arentsii, thyrsiflora, wigandioides, undulata, glutinosa, noctiflora, petunioides, obtusifolia, miersii, pauciflora, attenuate, acuminata , linearis, alata, sylvestris , rustica and suaveolens -
Cucumis 3655 anguria, melo and sativus CGTAACAAGGTTTCCGTAGGKG
Aeluropus 110873 - No primer found
Medicago 3877 sativa, lupulina, pamphylica, lunata, rostrate, plicata and truncatula -
Oryza 4597 sativa, glumipatula, rufipogon barthii glaberrima punctate, longistaminata, meridionalis, nivara, meridionalis and longistaminata -
Triticum 4564 aestivum, urartu and monococcum -
Hordeum 4512 vulgare, bulbosum, marinum, brevisubulatum and bogdanii -
LSU Arabidopsis 3701 petraea, thaliana and lyrata TGCTTAAACTCAGCGGGTAATC
Vicia 3904 sylvatica, tetrasperma, sativa,hirsute, sepium, parviflora, cracca, lathyroides, orobus, orobus,bithynica and faba TGCTTAAATTCAGCGGGTAGCC
Trifolium 3898 pretense, nigrescens, resupinatum, occidentale,subterraneum,strictum,ochroleucon, glomeratum,squamosum, ornithopodioides and repens TGCTTAAATTCAGCGGGTAGCC
Nicotiana 4085 tabacum, benthamiana, otophora, picilla, bigelovii, palmeri, tomentosiformis, tomentosa, digluta, kawakamii, clevelandii, nesophila , solanifolia, cordifolia, debneyi, arentsii, thyrsiflora, wigandioides, undulata, glutinosa, noctiflora, petunioides, obtusifolia, miersii, pauciflora, attenuate, acuminata , linearis, alata, sylvestris and suaveolens TGCTTAAACTCAGCGGGTAGTC
Cucumis 3655 melo, ritchiei and javanica TGCTTAAACTCAGCGGGTAGTC
Aeluropus 110873 lagopoide, pungens and littoralis TGCTTAAATTCAGCGGGTAATC
Medicago 3877 ruthenica, sativa, lupulina, arabica, polymorpha and minima TGCTTAAATTCAGCGGGTAGCC
pamphylica, lunata, rostrate and plicata TGCTTAAACTCAGCGGGTAGTC
Oryza 4597 sativa,glumipatula, rufipogon,barthiial, glaberrima,australiensis,officinalis, australiensis, ridleyi, malampuzhaensis , alta, nivara, rufipogon, meridionalis and longistaminata TGCTTAAACTCAGCGGGTAGTC
Triticum 4564 aestivum,spelta, turgidum,dicoccoides, petropavlovskyi, urartu and monococcum TGCTTAAACTCAGCGGGTAGTC
Hordeum 4512 vulgare, bulbosum, murinum,secalinum, brevisubulatum and bogdanii TGCTTAAACTCAGCGGGTAGTC
A degenerate primer is defined as IUPAC system for nucleotide nomenclature