| Primer | Genus | Taxid ID | Species | Divergent primer |
| SSU | Arabidopsis | 3701 | kamchatica, thaliana and lyrata | - |
| Vicia | 3904 | villosa, americana, unijuga, amoenane, amurensis, craccamal, pseudo-orobus, multicaulis, japonica, ramuliflora and faba | ||
| Trifolium | 3898 | alexandrinum, montanum, resupinatum and repens | - | |
| Nicotiana | 4085 | tabacum, benthamiana, otophora, picilla, bigelovii, palmeri, tomentosiformis, tomentosa, digluta, kawakamii, clevelandii, nesophila , solanifolia, cordifolia, debneyi, arentsii, thyrsiflora, wigandioides, undulata, glutinosa, noctiflora, petunioides, obtusifolia, miersii, pauciflora, attenuate, acuminata , linearis, alata, sylvestris , rustica and suaveolens | - | |
| Cucumis | 3655 | anguria, melo and sativus | CGTAACAAGGTTTCCGTAGGKG | |
| Aeluropus | 110873 | - | No primer found | |
| Medicago | 3877 | sativa, lupulina, pamphylica, lunata, rostrate, plicata and truncatula | - | |
| Oryza | 4597 | sativa, glumipatula, rufipogon barthii glaberrima punctate, longistaminata, meridionalis, nivara, meridionalis and longistaminata | - | |
| Triticum | 4564 | aestivum, urartu and monococcum | - | |
| Hordeum | 4512 | vulgare, bulbosum, marinum, brevisubulatum and bogdanii | - | |
| LSU | Arabidopsis | 3701 | petraea, thaliana and lyrata | TGCTTAAACTCAGCGGGTAATC |
| Vicia | 3904 | sylvatica, tetrasperma, sativa,hirsute, sepium, parviflora, cracca, lathyroides, orobus, orobus,bithynica and faba | TGCTTAAATTCAGCGGGTAGCC | |
| Trifolium | 3898 | pretense, nigrescens, resupinatum, occidentale,subterraneum,strictum,ochroleucon, glomeratum,squamosum, ornithopodioides and repens | TGCTTAAATTCAGCGGGTAGCC | |
| Nicotiana | 4085 | tabacum, benthamiana, otophora, picilla, bigelovii, palmeri, tomentosiformis, tomentosa, digluta, kawakamii, clevelandii, nesophila , solanifolia, cordifolia, debneyi, arentsii, thyrsiflora, wigandioides, undulata, glutinosa, noctiflora, petunioides, obtusifolia, miersii, pauciflora, attenuate, acuminata , linearis, alata, sylvestris and suaveolens | TGCTTAAACTCAGCGGGTAGTC | |
| Cucumis | 3655 | melo, ritchiei and javanica | TGCTTAAACTCAGCGGGTAGTC | |
| Aeluropus | 110873 | lagopoide, pungens and littoralis | TGCTTAAATTCAGCGGGTAATC | |
| Medicago | 3877 | ruthenica, sativa, lupulina, arabica, polymorpha and minima | TGCTTAAATTCAGCGGGTAGCC | |
| pamphylica, lunata, rostrate and plicata | TGCTTAAACTCAGCGGGTAGTC | |||
| Oryza | 4597 | sativa,glumipatula, rufipogon,barthiial, glaberrima,australiensis,officinalis, australiensis, ridleyi, malampuzhaensis , alta, nivara, rufipogon, meridionalis and longistaminata | TGCTTAAACTCAGCGGGTAGTC | |
| Triticum | 4564 | aestivum,spelta, turgidum,dicoccoides, petropavlovskyi, urartu and monococcum | TGCTTAAACTCAGCGGGTAGTC | |
| Hordeum | 4512 | vulgare, bulbosum, murinum,secalinum, brevisubulatum and bogdanii | TGCTTAAACTCAGCGGGTAGTC | |
| A degenerate primer is defined as IUPAC system for nucleotide nomenclature |