Primer
|
Genus
|
Taxid ID
|
Species
|
Divergent primer
|
SSU |
Arabidopsis
|
3701 |
kamchatica, thaliana and lyrata
|
- |
Vicia
|
3904 |
villosa, americana, unijuga, amoenane, amurensis, craccamal, pseudo-orobus, multicaulis, japonica, ramuliflora and faba
|
|
Trifolium
|
3898 |
alexandrinum, montanum, resupinatum and repens
|
- |
Nicotiana
|
4085 |
tabacum, benthamiana, otophora, picilla, bigelovii, palmeri, tomentosiformis, tomentosa, digluta, kawakamii, clevelandii, nesophila , solanifolia, cordifolia, debneyi, arentsii, thyrsiflora, wigandioides, undulata, glutinosa, noctiflora, petunioides, obtusifolia, miersii, pauciflora, attenuate, acuminata , linearis, alata, sylvestris , rustica and suaveolens
|
- |
Cucumis
|
3655 |
anguria, melo and sativus
|
CGTAACAAGGTTTCCGTAGGKG |
Aeluropus
|
110873 |
- |
No primer found |
Medicago
|
3877 |
sativa, lupulina, pamphylica, lunata, rostrate, plicata and truncatula
|
- |
Oryza
|
4597 |
sativa, glumipatula, rufipogon barthii glaberrima punctate, longistaminata, meridionalis, nivara, meridionalis and longistaminata
|
- |
Triticum
|
4564 |
aestivum, urartu and monococcum
|
- |
Hordeum
|
4512 |
vulgare, bulbosum, marinum, brevisubulatum and bogdanii
|
- |
LSU |
Arabidopsis
|
3701 |
petraea, thaliana and lyrata
|
TGCTTAAACTCAGCGGGTAATC |
Vicia
|
3904 |
sylvatica, tetrasperma, sativa,hirsute, sepium, parviflora, cracca, lathyroides, orobus, orobus,bithynica and faba
|
TGCTTAAATTCAGCGGGTAGCC |
Trifolium
|
3898 |
pretense, nigrescens, resupinatum, occidentale,subterraneum,strictum,ochroleucon, glomeratum,squamosum, ornithopodioides and repens
|
TGCTTAAATTCAGCGGGTAGCC |
Nicotiana
|
4085 |
tabacum, benthamiana, otophora, picilla, bigelovii, palmeri, tomentosiformis, tomentosa, digluta, kawakamii, clevelandii, nesophila , solanifolia, cordifolia, debneyi, arentsii, thyrsiflora, wigandioides, undulata, glutinosa, noctiflora, petunioides, obtusifolia, miersii, pauciflora, attenuate, acuminata , linearis, alata, sylvestris and suaveolens
|
TGCTTAAACTCAGCGGGTAGTC |
Cucumis
|
3655 |
melo, ritchiei and javanica
|
TGCTTAAACTCAGCGGGTAGTC |
Aeluropus
|
110873 |
lagopoide, pungens and littoralis
|
TGCTTAAATTCAGCGGGTAATC |
Medicago
|
3877 |
ruthenica, sativa, lupulina, arabica, polymorpha and minima
|
TGCTTAAATTCAGCGGGTAGCC |
pamphylica, lunata, rostrate and plicata
|
TGCTTAAACTCAGCGGGTAGTC |
Oryza
|
4597 |
sativa,glumipatula, rufipogon,barthiial, glaberrima,australiensis,officinalis, australiensis, ridleyi, malampuzhaensis , alta, nivara, rufipogon, meridionalis and longistaminata
|
TGCTTAAACTCAGCGGGTAGTC |
Triticum
|
4564 |
aestivum,spelta, turgidum,dicoccoides, petropavlovskyi, urartu and monococcum
|
TGCTTAAACTCAGCGGGTAGTC |
Hordeum
|
4512 |
vulgare, bulbosum, murinum,secalinum, brevisubulatum and bogdanii
|
TGCTTAAACTCAGCGGGTAGTC |
A degenerate primer is defined as IUPAC system for nucleotide nomenclature |