Fig. 3.

Phylogenetic comparison of bladder and vaginal strains isolated from individual women using the 40 universal core genes. a Maximum likelihood tree constructed from E. coli strains isolated from the bladder (red) and vagina (blue) of individual patient (P1) and four reference strains. b Maximum likelihood tree constructed from S. anginosus strains isolated from the bladder (red) and vagina (blue) of individual patient (P2) and five reference strains. c Maximum likelihood tree constructed from L. iners strains isolated from the bladder (red) and vagina (blue) of individual patient (P3) and four reference strains. d Maximum likelihood tree constructed from L. crispatus strains isolated from the bladder (red) and vagina (blue) of individual patient (P4) and seven reference strains