Table 1.
Details for human-derived gut bacteria screened for their ability to reduce or utilize TMAO
| Isolate* | Identified as | Source | Reference | Facultative anaerobe? |
|---|---|---|---|---|
| D2(9) | [Clostridium] innocuum | Human faeces | M.L. Jiménez-Pranteda, unpublished | No |
| L16-FAA1 | [Clostridium] ramosum | Human caecum | L. Hoyles, unpublished | No |
| L12-BSM1 | Actinomyces odontolyticus | Human caecum | L. Hoyles, unpublished | No |
| L6-BSM10 | Actinomyces viscosus | Human caecum | L. Hoyles, unpublished | No |
| L6-FAA7 | Bacteroides fragilis | Human caecum | L. Hoyles, unpublished | No |
| D1(4) | Bacteroides vulgatus | Human faeces | M.L. Jiménez-Pranteda, unpublished | No |
| L9-FAA7 | Bacteroides vulgatus | Human caecum | L. Hoyles, unpublished | No |
| DSM 20083T | Bifidobacterium adolescentis | Human intestine | DSMZ† | No |
| LCR26 | Bifidobacterium animalis subsp. lactis | Infant faeces | [51] | No |
| LCR11 | Bifidobacterium bidifum | Infant faeces | [51] | No |
| L25-MRS2 | Bifidobacterium bifidum | Human caecum | L. Hoyles, unpublished | No |
| LCR5 | Bifidobacterium breve | Infant faeces | [51] | No |
| LCR8 | Bifidobacterium breve | Infant faeces | [51] | No |
| LCR1 | Bifidobacterium dentium | Infant faeces | [51] | No |
| DSM 20093T | Bifidobacterium gallicum | Human intestine | DSMZ | No |
| LCR6 | Bifidobacterium longum | Infant faeces | [51] | No |
| DSM 20088T | Bifidobacterium longum subsp. infantis | Infant intestine | DSMZ | No |
| LCR2 | Bifidobacterium longum subsp. infantis | Infant faeces | [51] | No |
| DSM 20219T | Bifidobacterium longum subsp. longum | Human intestine | DSMZ | No |
| LCR3 | Bifidobacterium pseudocatenulatum | Infant faeces | [51] | No |
| L19-MRS1 | Bifidobacterium longum subsp. longum | Human caecum | L. Hoyles, unpublished | No |
| L25-MRS8 | Bifidobacterium longum subsp. longum | Human caecum | L. Hoyles, unpublished | No |
| L26-MRS4 | Bifidobacterium animalis subsp. lactis | Human caecum | L. Hoyles, unpublished | No |
| L26-FAA1 | Citrobacter gillenii | Human caecum | L. Hoyles, unpublished | Yes |
| L8-FAA3 | Citrobacter koseri | Human caecum | L. Hoyles, unpublished | Yes |
| L16-FAA6 | Clostridium paraputrificum | Human caecum | L. Hoyles, unpublished | No |
| L20-BSM1 | Clostridium perfringens | Human caecum | L. Hoyles, unpublished | No |
| D1(9) | Clostridium sporogenes | Human faeces | M.L. Jiménez-Pranteda, unpublished | No |
| D2(14) | Enterococcus faecalis | Human faeces | M.L. Jiménez-Pranteda, unpublished | Yes |
| D3(1) | Enterococcus faecalis | Human faeces | M.L. Jiménez-Pranteda, unpublished | Yes |
| D5(2) | Enterococcus faecalis | Human faeces | M.L. Jiménez-Pranteda, unpublished | Yes |
| D6(1) | Enterococcus faecium | Human faeces | M.L. Jiménez-Pranteda, unpublished | Yes |
| D6(5) | Enterococcus gallinarum | Human faeces | M.L. Jiménez-Pranteda, unpublished | Yes |
| D1(2) | Escherichia coli | Human faeces | M.L. Jiménez-Pranteda, unpublished | Yes |
| D2(1) | Escherichia coli | Human faeces | M.L. Jiménez-Pranteda, unpublished | Yes |
| D2(2) | Escherichia coli | Human faeces | M.L. Jiménez-Pranteda, unpublished | Yes |
| D2(8) | Escherichia coli | Human faeces | M.L. Jiménez-Pranteda, unpublished | Yes |
| D3(8) | Escherichia coli | Human faeces | M.L. Jiménez-Pranteda, unpublished | Yes |
| D4(15) | Escherichia coli | Human faeces | M.L. Jiménez-Pranteda, unpublished | Yes |
| D5(1) | Escherichia coli | Human faeces | M.L. Jiménez-Pranteda, unpublished | Yes |
| L1-FAA5 | Escherichia coli | Human caecum | L. Hoyles, unpublished | Yes |
| L13-FAA2 | Escherichia coli | Human caecum | L. Hoyles, unpublished | Yes |
| L16-FAA5 | Escherichia coli | Human caecum | L. Hoyles, unpublished | Yes |
| L19-FAA2 | Escherichia coli | Human caecum | L. Hoyles, unpublished | Yes |
| L20-FAA3 | Escherichia coli | Human caecum | L. Hoyles, unpublished | Yes |
| L24-FAA5 | Escherichia coli | Human caecum | L. Hoyles, unpublished | Yes |
| L5-FAA2 | Escherichia coli | Human caecum | L. Hoyles, unpublished | Yes |
| L6-FAA1 | Escherichia coli | Human caecum | L. Hoyles, unpublished | Yes |
| L9-MRS1 | Escherichia coli | Human caecum | L. Hoyles, unpublished | Yes |
| L9-FAA5 | Fusobacterium ulcerans | Human caecum | L. Hoyles, unpublished | Yes |
| L15-FAA9 | Hafnia paralvei | Human caecum | L. Hoyles, unpublished | No |
| L4-FAA5 | Klebsiella pneumoniae subsp. pneumoniae | Human caecum | [52] | Yes |
| L26-MRS5 | Lactobacillus fermentum | Human caecum | L. Hoyles, unpublished | No |
| L26-FAA6 | Lactobacillus rhamnosus | Human caecum | L. Hoyles, unpublished | No |
| L13-FAA10 | Parabacteroides johnsonii | Human caecum | L. Hoyles, unpublished | No |
| D4(1) | Paraclostridium bifermentans | Human faeces | M.L. Jiménez-Pranteda, unpublished | No |
| L1-FAA6 | Pseudomonas aeruginosa | Human caecum | L. Hoyles, unpublished | Yes |
| D2(4) | Staphyloccoccus hominis | Human faeces | M.L. Jiménez-Pranteda, unpublished | Yes |
| D1(5) | Streptococcus anginosus | Human faeces | M.L. Jiménez-Pranteda, unpublished | Yes |
| D5(12) | Streptococcus anginosus | Human faeces | M.L. Jiménez-Pranteda, unpublished | Yes |
| L25-MRS1 | Streptococcus gallolyticus | Human caecum | L. Hoyles, unpublished | Yes |
| L4-MRS5 | Streptococcus oralis | Human caecum | L. Hoyles, unpublished | Yes |
| L4-MRS1 | Streptococcus sanguinis | Human caecum | L. Hoyles, unpublished | Yes |
| D4(3) | Streptococcus sp. | Human faeces | M.L. Jiménez-Pranteda, unpublished | Yes |
| L26-MRS7 | Streptococcus vestibularis | Human caecum | L. Hoyles, unpublished | Yes |
| LCR4 | Unknown Bifidobacterium | Infant faeces | [51] | No |
*Ln- prefix, different numbers indicate isolates recovered from different individuals
†DSMZ, Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures